HL_8BRM_051

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_051 not in the Motif Atlas

Geometric match to HL_4V88_210

Geometric discrepancy: 0.0975

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BRM|1|Lt|A|1708
8BRM|1|Lt|G|1709
8BRM|1|Lt|C|1710
8BRM|1|Lt|G|1711
8BRM|1|Lt|A|1712
8BRM|1|Lt|U|1713

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lj

Ribosomal protein L36-1

Chain Lp

Ribosomal protein L44