HL_8BRM_052

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8BRM|1|Lt|A|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_052 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2212

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BRM|1|Lt|G|1741
8BRM|1|Lt|U|1742
8BRM|1|Lt|A|1743
8BRM|1|Lt|A|1744
8BRM|1|Lt|C|1745
8BRM|1|Lt|U|1746
8BRM|1|Lt|A|1747
8BRM|1|Lt|U|1748
8BRM|1|Lt|G|1749
8BRM|1|Lt|A|1750
8BRM|1|Lt|C|1751

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain St

Small subunit ribosomal RNA; SSU rRNA