HL_8BRM_069

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_069 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1972

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BRM|1|Lt|C|2485
8BRM|1|Lt|G|2486
8BRM|1|Lt|G|2487
8BRM|1|Lt|C|2488
8BRM|1|Lt|C|2489
8BRM|1|Lt|G|2490

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain LV

Ribosomal protein L22e

Chain Le

Ribosomal protein L31B