HL_8BRM_076

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_076 not in the Motif Atlas

Geometric match to HL_5J7L_003

Geometric discrepancy: 0.2597

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BRM|1|St|G|138
8BRM|1|St|C|139
8BRM|1|St|A|140
8BRM|1|St|A|141
8BRM|1|St|C|142
8BRM|1|St|C|143

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SG

Ribosomal protein S6

Chain Sb

Ribosomal protein S24