HL_8BRM_080

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCUGCGAGACGG

Length

12 nucleotides

Bulged bases

8BRM|1|St|C|315, 8BRM|1|St|G|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_080 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1165

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|C|306
8BRM|1|St|C|307
8BRM|1|St|U|308
8BRM|1|St|G|309
8BRM|1|St|C|310
8BRM|1|St|G|311
8BRM|1|St|A|312
8BRM|1|St|G|313
8BRM|1|St|A|314
8BRM|1|St|C|315
8BRM|1|St|G|316
8BRM|1|St|G|317

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SG

Ribosomal protein S6

Chain SI

Ribosomal protein S8