HL_8BRM_085

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_085 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0975

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BRM|1|St|C|449
8BRM|1|St|A|450
8BRM|1|St|G|451
8BRM|1|St|C|452
8BRM|1|St|C|453
8BRM|1|St|G|454

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SO

Ribosomal protein S23