HL_8BRM_090

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAUCAGACACC

Length

11 nucleotides

Bulged bases

8BRM|1|St|C|758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_090 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1198

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BRM|1|St|G|751
8BRM|1|St|A|752
8BRM|1|St|U|753
8BRM|1|St|C|754
8BRM|1|St|A|755
8BRM|1|St|G|756
8BRM|1|St|A|757
8BRM|1|St|C|758
8BRM|1|St|A|759
8BRM|1|St|C|760
8BRM|1|St|C|761

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Ribosomal protein S14

Chain Sd

Ribosomal protein S26