HL_8BRM_099

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_099 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2428

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8BRM|1|St|C|1104
8BRM|1|St|G|1105
8BRM|1|St|G|1106
8BRM|1|St|C|1107
8BRM|1|St|A|1108
8BRM|1|St|G|1109

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SU

Ribosomal protein S17