HL_8BTK_011

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8BTK|1|A2|C|503, 8BTK|1|A2|C|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2487

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BTK|1|A2|C|499
8BTK|1|A2|G|500
8BTK|1|A2|A|501
8BTK|1|A2|C|502
8BTK|1|A2|C|503
8BTK|1|A2|C|504
8BTK|1|A2|G|505

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ax

40S ribosomal protein S24