HL_8BTK_028

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_028 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.1789

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8BTK|1|A2|C|1418
8BTK|1|A2|C|1419
8BTK|1|A2|C|1420
8BTK|1|A2|G|1421
8BTK|1|A2|A|1422
8BTK|1|A2|G|1423

Current chains

Chain A2

18S rRNA

Nearby chains

Chain As

40S ribosomal protein S19