HL_8BTK_034

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8BTK|1|A2|G|1850

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_034 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.1361

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BTK|1|A2|G|1848
8BTK|1|A2|U|1849
8BTK|1|A2|G|1850
8BTK|1|A2|MA6|1851
8BTK|1|A2|MA6|1852
8BTK|1|A2|C|1853

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA