HL_8BTK_048

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_048 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3364

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BTK|1|B5|U|392
8BTK|1|B5|U|393
8BTK|1|B5|G|394
8BTK|1|B5|A|395
8BTK|1|B5|A|396
8BTK|1|B5|G|397
8BTK|1|B5|A2M|398
8BTK|1|B5|G|399

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain SX

Protein transport protein Sec61 subunit alpha isoform 1