HL_8BTK_052

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

8BTK|1|B5|U|1070, 8BTK|1|B5|C|1071, 8BTK|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_052 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3671

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BTK|1|B5|G|1069
8BTK|1|B5|U|1070
8BTK|1|B5|C|1071
8BTK|1|B5|C|1072
8BTK|1|B5|C|1073
8BTK|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

Ribosomal protein L10