HL_8BTK_066

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8BTK|1|B5|A|1923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_066 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2718

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|C|1917
8BTK|1|B5|A|1918
8BTK|1|B5|U|1919
8BTK|1|B5|G|1920
8BTK|1|B5|G|1921
8BTK|1|B5|A|1922
8BTK|1|B5|A|1923
8BTK|1|B5|G|1924
8BTK|1|B5|U|1925
8BTK|1|B5|C|1926
8BTK|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

Ribosomal protein L12