HL_8BTK_083

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8BTK|1|B5|C|2657

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_083 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0744

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BTK|1|B5|U|2653
8BTK|1|B5|G|2654
8BTK|1|B5|A|2655
8BTK|1|B5|A|2656
8BTK|1|B5|C|2657
8BTK|1|B5|A2M|2658
8BTK|1|B5|G|2659

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19