HL_8BTK_087

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8BTK|1|B5|A|3374, 8BTK|1|B5|A|3375, 8BTK|1|B5|U|3376, 8BTK|1|B5|A|3380

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_087 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.3236

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8BTK|1|B5|G|3370
8BTK|1|B5|PSU|3371
8BTK|1|B5|U|3372
8BTK|1|B5|U|3373
8BTK|1|B5|A|3374
8BTK|1|B5|A|3375
8BTK|1|B5|U|3376
8BTK|1|B5|U|3377
8BTK|1|B5|A|3378
8BTK|1|B5|A|3379
8BTK|1|B5|A|3380
8BTK|1|B5|A|3381
8BTK|1|B5|C|3382

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain Bj

Ribosomal protein L37