HL_8BTK_090

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8BTK|1|B5|C|3493, 8BTK|1|B5|A|3495

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_090 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.4198

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BTK|1|B5|G|3489
8BTK|1|B5|PSU|3490
8BTK|1|B5|A|3491
8BTK|1|B5|A2M|3492
8BTK|1|B5|C|3493
8BTK|1|B5|PSU|3494
8BTK|1|B5|A|3495
8BTK|1|B5|PSU|3496
8BTK|1|B5|G|3497
8BTK|1|B5|A|3498
8BTK|1|B5|C|3499

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

Transfer RNA; tRNA