HL_8BTK_092

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BTK|1|B5|A|3608, 8BTK|1|B5|A|3609, 8BTK|1|B5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_092 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1028

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BTK|1|B5|G|3605
8BTK|1|B5|G|3606
8BTK|1|B5|G|3607
8BTK|1|B5|A|3608
8BTK|1|B5|A|3609
8BTK|1|B5|C|3610
8BTK|1|B5|G|3611
8BTK|1|B5|G|3612
8BTK|1|B5|G|3613
8BTK|1|B5|C|3614

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Be

eL32