HL_8BTK_100
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8BTK|1|B5|U|4100
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BTK_100 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.4862
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8BTK|1|B5|U|4098
8BTK|1|B5|PSU|4099
8BTK|1|B5|U|4100
8BTK|1|B5|G|4101
8BTK|1|B5|G|4102
8BTK|1|B5|G|4103
8BTK|1|B5|U|4104
8BTK|1|B5|U|4105
8BTK|1|B5|U|4106
8BTK|1|B5|PSU|4107
8BTK|1|B5|A|4108
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- L13
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
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