HL_8BTK_101

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8BTK|1|B5|U|4165, 8BTK|1|B5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_101 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3816

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BTK|1|B5|C|4163
8BTK|1|B5|G|4164
8BTK|1|B5|U|4165
8BTK|1|B5|PSU|4166
8BTK|1|B5|C|4167
8BTK|1|B5|A|4168
8BTK|1|B5|PSU|4169
8BTK|1|B5|A|4170
8BTK|1|B5|G|4171

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

Ribosomal protein L10

Chain Bm

Ubiquitin