HL_8BTK_113
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BTK_113 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2802
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8BTK|1|B8|C|47
8BTK|1|B8|A|48
8BTK|1|B8|G|49
8BTK|1|B8|C|50
8BTK|1|B8|U|51
8BTK|1|B8|A|52
8BTK|1|B8|G|53
8BTK|1|B8|C|54
8BTK|1|B8|PSU|55
8BTK|1|B8|G|56
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- Ribosomal_L23eN domain-containing protein
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
- Chain SX
- Protein transport protein Sec61 subunit alpha isoform 1
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