HL_8BTK_114
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BTK_114 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.3383
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B8|G|68
8BTK|1|B8|PSU|69
8BTK|1|B8|G|70
8BTK|1|B8|A|71
8BTK|1|B8|A|72
8BTK|1|B8|U|73
8BTK|1|B8|U|74
8BTK|1|B8|OMG|75
8BTK|1|B8|C|76
8BTK|1|B8|A|77
8BTK|1|B8|G|78
8BTK|1|B8|G|79
8BTK|1|B8|A|80
8BTK|1|B8|C|81
8BTK|1|B8|A|82
8BTK|1|B8|C|83
8BTK|1|B8|A|84
8BTK|1|B8|U|85
8BTK|1|B8|U|86
8BTK|1|B8|G|87
8BTK|1|B8|A|88
8BTK|1|B8|U|89
8BTK|1|B8|C|90
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- Nascent chain
- Chain BY
- Ribosomal protein L26
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
- Chain SY
- Protein transport protein Sec61 subunit gamma
- Chain TA
- Translocon-associated protein subunit alpha
Coloring options: