HL_8BUU_034

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8BUU|1|A|U|1435, 8BUU|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_034 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1074

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BUU|1|A|G|1428
8BUU|1|A|U|1429
8BUU|1|A|U|1430
8BUU|1|A|G|1431
8BUU|1|A|A|1432
8BUU|1|A|U|1433
8BUU|1|A|A|1434
8BUU|1|A|U|1435
8BUU|1|A|U|1436
8BUU|1|A|C|1437

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23