HL_8BUU_035

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUGGAUA

Length

9 nucleotides

Bulged bases

8BUU|1|A|U|1500, 8BUU|1|A|U|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_035 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.21

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8BUU|1|A|U|1498
8BUU|1|A|A|1499
8BUU|1|A|U|1500
8BUU|1|A|U|1501
8BUU|1|A|G|1502
8BUU|1|A|G|1503
8BUU|1|A|A|1504
8BUU|1|A|U|1505
8BUU|1|A|A|1506

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17