HL_8BUU_053

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8BUU|1|A|A|2297, 8BUU|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0833

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8BUU|1|A|C|2293
8BUU|1|A|U|2294
8BUU|1|A|A|2295
8BUU|1|A|A|2296
8BUU|1|A|A|2297
8BUU|1|A|A|2298
8BUU|1|A|G|2299
8BUU|1|A|G|2300
8BUU|1|A|U|2301
8BUU|1|A|A|2302
8BUU|1|A|A|2303
8BUU|1|A|C|2304
8BUU|1|A|G|2305

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27