HL_8BUU_098

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8BUU|1|a|G|1104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_098 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0918

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8BUU|1|a|G|1099
8BUU|1|a|U|1100
8BUU|1|a|U|1101
8BUU|1|a|A|1102
8BUU|1|a|A|1103
8BUU|1|a|G|1104
8BUU|1|a|U|1105
8BUU|1|a|C|1106

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7