HL_8BYV_006
3D structure
- PDB id
- 8BYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 8BYV|1|a|G|274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BYV_006 not in the Motif Atlas
- Homologous match to HL_5J7L_006
- Geometric discrepancy: 0.155
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8BYV|1|a|G|267
8BYV|1|a|G|268
8BYV|1|a|U|269
8BYV|1|a|A|270
8BYV|1|a|A|271
8BYV|1|a|C|272
8BYV|1|a|G|273
8BYV|1|a|G|274
8BYV|1|a|C|275
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain q
- 30S ribosomal protein S17
- Chain t
- 30S ribosomal protein S20
Coloring options: