HL_8BYV_008

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8BYV|1|a|C|338, 8BYV|1|a|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BYV_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.128

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BYV|1|a|A|328
8BYV|1|a|A|329
8BYV|1|a|C|330
8BYV|1|a|U|331
8BYV|1|a|G|332
8BYV|1|a|A|333
8BYV|1|a|G|334
8BYV|1|a|A|335
8BYV|1|a|C|336
8BYV|1|a|A|337
8BYV|1|a|C|338
8BYV|1|a|G|339
8BYV|1|a|G|340
8BYV|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20