HL_8BYV_025

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8BYV|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BYV_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.3202

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8BYV|1|a|G|1101
8BYV|1|a|U|1102
8BYV|1|a|U|1103
8BYV|1|a|A|1104
8BYV|1|a|A|1105
8BYV|1|a|G|1106
8BYV|1|a|U|1107
8BYV|1|a|C|1108

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2