HL_8C00_010

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8C00|1|2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_010 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1028

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8C00|1|2|C|414
8C00|1|2|C|415
8C00|1|2|A|416
8C00|1|2|A|417
8C00|1|2|G|418
8C00|1|2|G|419

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain t

Ribosome biogenesis protein TSR1