8C00 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C00_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8C00_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8C00_005 | 1/2/243:250 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_8C00_007 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8C00_008 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8C00_009 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8C00_010 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_8C00_011 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8C00_013 | 1/2/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8C00_014 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8C00_015 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8C00_018 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8C00_019 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_8C00_020 | 1/2/997:1007 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8C00_022 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_8C00_023 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_8C00_026 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_8C00_027 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_8C00_028 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8C00_030 | 1/2/1777:1784 | T-loop with 1 bulged base | geometric HL_4V88_191 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C00_002 | No text annotation | ||
| HL_8C00_004 | No text annotation | ||
| HL_8C00_006 | No text annotation | ||
| HL_8C00_012 | No text annotation | ||
| HL_8C00_016 | No text annotation | ||
| HL_8C00_017 | No text annotation | ||
| HL_8C00_021 | No text annotation | ||
| HL_8C00_024 | No text annotation | ||
| HL_8C00_025 | No text annotation | ||
| HL_8C00_029 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C00_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8C00_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_8C00_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_8C00_004 | 1/2/42:48, 1/2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8C00_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8C00_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8C00_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8C00_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8C00_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8C00_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8C00_011 | 1/2/142:149, 1/2/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_8C00_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_6RA4_002 IL_10167.6 | |
| IL_8C00_013 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
| IL_8C00_014 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_8C00_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8C00_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8C00_018 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8C00_019 | 1/2/318:323, 1/2/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_8C00_020 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8C00_021 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8C00_022 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_8C00_023 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8C00_024 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8C00_025 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_8C00_026 | 1/2/514:516, 1/2/536:543 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8C00_027 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_8C00_028 | 1/2/518:520, 1/2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8C00_029 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_8C00_030 | 1/2/557:559, 1/2/586:587 | Single bulged U | geometric IL_2PJP_001 IL_89505.4 | |
| IL_8C00_032 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8C00_033 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8C00_034 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8C00_035 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_8C00_036 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8C00_037 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8C00_038 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8C00_039 | 1/2/817:822, 1/2/850:854 | No text annotation | geometric IL_4V88_422 NA | |
| IL_8C00_040 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_8C00_073 | 1/2/868:870, 1/2/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8C00_042 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_8C00_043 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_8C00_044 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8C00_045 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8C00_046 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_8C00_047 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_8C00_048 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8C00_049 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8C00_050 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | geometric IL_2A64_003 IL_89505.4 | |
| IL_8C00_051 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8C00_052 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_8C00_053 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8C00_054 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8C00_056 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_8C00_058 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_8C00_060 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_8C00_061 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_8C00_062 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_8C00_063 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_8C00_064 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8C00_065 | 1/2/1653:1656, 1/2/1744:1747 | tSH-tHW | geometric IL_5UNE_005 IL_85033.2 | |
| IL_8C00_066 | 1/2/1656:1658, 1/2/1743:1744 | No text annotation | ||
| IL_8C00_067 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8C00_068 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8C00_069 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_8C00_070 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_8C00_071 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C00_015 | Isolated tHS basepair with bulges | ||
| IL_8C00_031 | No text annotation | ||
| IL_8C00_072 | Isolated non-canonical cWW pair | ||
| IL_8C00_041 | Tandem non-canonical cWW pairs | ||
| IL_8C00_055 | No text annotation | ||
| IL_8C00_057 | No text annotation | ||
| IL_8C00_059 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C00_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8C00_009 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8C00_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8C00_010 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8C00_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8C00_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8C00_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8C00_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | ||
| J3_8C00_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8C00_008 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J4_8C00_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_8C00_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_8C00_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8C00_002 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_8C00_003 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA |
Problematic loops
No problematic loops
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