HL_8C00_013

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_013 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1083

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8C00|1|2|A|520
8C00|1|2|A|521
8C00|1|2|U|522
8C00|1|2|G|523
8C00|1|2|U|524
8C00|1|2|A|525
8C00|1|2|A|526
8C00|1|2|A|527
8C00|1|2|U|528
8C00|1|2|A|529
8C00|1|2|C|530
8C00|1|2|C|531
8C00|1|2|U|532

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A

Chain t

Ribosome biogenesis protein TSR1