HL_8C00_017

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUUUUUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_017 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3478

The information below is about HL_4LX6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8C00|1|2|A|829
8C00|1|2|U|830
8C00|1|2|U|831
8C00|1|2|U|832
8C00|1|2|U|833
8C00|1|2|U|839
8C00|1|2|U|840
8C00|1|2|U|841
8C00|1|2|C|842
8C00|1|2|U|843

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain X

40S ribosomal protein S11-A