HL_8C00_020

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2552

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8C00|1|2|G|997
8C00|1|2|A|998
8C00|1|2|U|999
8C00|1|2|C|1000
8C00|1|2|A|1001
8C00|1|2|G|1002
8C00|1|2|A|1003
8C00|1|2|U|1004
8C00|1|2|A|1005
8C00|1|2|C|1006
8C00|1|2|C|1007

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Z

40S ribosomal protein S14-A

Chain p

Pre-rRNA-processing protein PNO1