HL_8C00_028

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8C00|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_028 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2383

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8C00|1|2|G|1594
8C00|1|2|U|1595
8C00|1|2|C|1596
8C00|1|2|A|1597
8C00|1|2|U|1598
8C00|1|2|C|1599
8C00|1|2|A|1600
8C00|1|2|G|1601
8C00|1|2|C|1602

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain I

40S ribosomal protein S19-A