8C3A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C3A_001 | 1/1/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_8C3A_002 | 1/1/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_8C3A_003 | 1/1/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_8C3A_004 | 1/1/131:135 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_8C3A_005 | 1/1/193:200 | T-loop with 2 stacked bulged bases | ||
| HL_8C3A_006 | 1/1/207:211 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8C3A_007 | 1/1/215:223 | T-loop with unstacked turn | ||
| HL_8C3A_008 | 1/1/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_8C3A_009 | 1/1/303:312 | Pseudoknot geometry | ||
| HL_8C3A_010 | 1/1/357:362 | GNRA | ||
| HL_8C3A_011 | 1/1/382:387 | GNRA | ||
| HL_8C3A_012 | 1/1/539:546 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_8C3A_013 | 1/1/597:602 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_8C3A_014 | 1/1/638:647 | T-loop with 2 stacked bulged bases | ||
| HL_8C3A_015 | 1/1/684:692 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_8C3A_016 | 1/1/705:710 | GNRA | ||
| HL_8C3A_017 | 1/1/729:734 | No text annotation | homologous HL_8CRE_016 HL_57875.1 | |
| HL_8C3A_018 | 1/1/759:764 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_8C3A_019 | 1/1/840:845 | GNRA | ||
| HL_8C3A_020 | 1/1/872:881 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8C3A_021 | 1/1/906:914 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_8C3A_022 | 1/1/954:959 | Externally structured | ||
| HL_8C3A_023 | 1/1/1017:1027 | Anticodon loop related | ||
| HL_8C3A_024 | 1/1/1072:1079 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_8C3A_025 | 1/1/1122:1128 | GNRA | ||
| HL_8C3A_026 | 1/1/1144:1151 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8C3A_027 | 1/1/1235:1245 | No text annotation | geometric HL_5D8H_001 HL_19210.3 | |
| HL_8C3A_028 | 1/1/1263:1270 | GNRA wlth tandem sheared | ||
| HL_8C3A_029 | 1/1/1343:1353 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_8C3A_030 | 1/1/1399:1404 | GNRA | ||
| HL_8C3A_031 | 1/1/1458:1466 | T-loop with 2 stacked bulged bases | ||
| HL_8C3A_032 | 1/1/1502:1508 | Pseudoknot geometry with 3' bulge | ||
| HL_8C3A_033 | 1/1/1540:1545 | GNRA variation | ||
| HL_8C3A_034 | 1/1/1562:1569 | No text annotation | homologous HL_8CRE_033 HL_28075.1 | |
| HL_8C3A_035 | 1/1/1595:1604 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8C3A_036 | 1/1/1630:1635 | GNRA | ||
| HL_8C3A_037 | 1/1/1676:1684 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_8C3A_038 | 1/1/1715:1721 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_8C3A_039 | 1/1/1756:1761 | No text annotation | homologous HL_8CRE_038 HL_75660.5 | |
| HL_8C3A_040 | 1/1/1788:1792 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_8C3A_041 | 1/1/1840:1847 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8C3A_042 | 1/1/1858:1864 | GNRA | ||
| HL_8C3A_043 | 1/1/1919:1924 | UNCG | ||
| HL_8C3A_045 | 1/1/2088:2092 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_8C3A_046 | 1/1/2113:2123 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8C3A_047 | 1/1/2142:2148 | GNRA | ||
| HL_8C3A_048 | 1/1/2198:2203 | GNRA | ||
| HL_8C3A_049 | 1/1/2231:2241 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_8C3A_050 | 1/1/2270:2278 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_8C3A_051 | 1/1/2347:2356 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_8C3A_052 | 1/1/2447:2454 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_8C3A_053 | 1/1/2514:2521 | No text annotation | homologous HL_8CRE_051 HL_00914.1 | |
| HL_8C3A_054 | 1/1/2543:2547 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8C3A_055 | 1/1/2588:2596 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_8C3A_056 | 1/1/2605:2617 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_8C3A_057 | 1/1/2645:2653 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_8C3A_058 | 1/1/2665:2672 | Pseudoknot geometry | ||
| HL_8C3A_059 | 1/1/2696:2704 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_8C3A_060 | 1/1/2716:2721 | GNRA | ||
| HL_8C3A_061 | 1/1/2748:2756 | Pseudoknot geometry | ||
| HL_8C3A_062 | 1/1/2812:2820 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8C3A_063 | 1/1/2869:2876 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8C3A_064 | 1/1/2892:2898 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8C3A_065 | 1/1/2935:2940 | GNRA | ||
| HL_8C3A_066 | 1/1/2997:3002 | GNRA | ||
| HL_8C3A_067 | 1/1/3040:3045 | Ribsomal LSU H95 | ||
| HL_8C3A_068 | 1/1/3082:3096 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_8C3A_069 | 1/1/3160:3167 | No text annotation | homologous HL_8CRE_067 HL_28075.1 | |
| HL_8C3A_070 | 1/1/3205:3212 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_8C3A_071 | 1/1/3268:3276 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_8C3A_072 | 1/1/3315:3318 | Mini UNCG | ||
| HL_8C3A_228 | 1/3/32:45 | No text annotation | homologous HL_8OI5_068 HL_13971.1 | |
| HL_8C3A_073 | 1/3/36:41 | No text annotation | geometric HL_8P9A_184 HL_47787.2 | |
| HL_8C3A_074 | 1/3/88:93 | GNRA | ||
| HL_8C3A_229 | 1/4/47:56 | Pseudoknot with intercalation | ||
| HL_8C3A_230 | 1/4/69:89 | No text annotation | homologous HL_8CRE_075 HL_51921.1 | |
| HL_8C3A_076 | 1/4/108:114 | No text annotation | homologous HL_8CRE_076 HL_53890.2 | |
| HL_8C3A_077 | 1/4/124:129 | No text annotation | homologous HL_8CRE_077 HL_86883.1 | |
| HL_8C3A_078 | 1/AS/37:44 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_8C3A_079 | 1/AS/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8C3A_080 | 1/AS/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8C3A_081 | 1/AS/131:135 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8C3A_082 | 1/AS/193:200 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8C3A_083 | 1/AS/207:211 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8C3A_084 | 1/AS/215:223 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8C3A_085 | 1/AS/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8C3A_086 | 1/AS/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8C3A_087 | 1/AS/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8C3A_088 | 1/AS/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8C3A_089 | 1/AS/539:546 | No text annotation | homologous HL_8C3A_012 NA | |
| HL_8C3A_090 | 1/AS/597:602 | No text annotation | homologous HL_8C3A_013 NA | |
| HL_8C3A_091 | 1/AS/638:647 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8C3A_092 | 1/AS/684:692 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8C3A_093 | 1/AS/705:710 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8C3A_094 | 1/AS/729:734 | No text annotation | homologous HL_8C3A_017 NA | |
| HL_8C3A_095 | 1/AS/759:764 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8C3A_096 | 1/AS/840:845 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8C3A_097 | 1/AS/872:881 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8C3A_098 | 1/AS/906:914 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8C3A_099 | 1/AS/954:959 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8C3A_232 | 1/AS/1019:1025 | GNRA | homologous HL_8P9A_232 HL_37824.7 | |
| HL_8C3A_101 | 1/AS/1072:1079 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_8C3A_102 | 1/AS/1122:1128 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8C3A_103 | 1/AS/1144:1151 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8C3A_104 | 1/AS/1235:1245 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_8C3A_105 | 1/AS/1263:1270 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_8C3A_106 | 1/AS/1343:1353 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8C3A_107 | 1/AS/1399:1404 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8C3A_108 | 1/AS/1458:1466 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8C3A_109 | 1/AS/1502:1508 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8C3A_110 | 1/AS/1540:1545 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8C3A_111 | 1/AS/1562:1569 | No text annotation | ||
| HL_8C3A_112 | 1/AS/1595:1604 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8C3A_113 | 1/AS/1630:1635 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8C3A_114 | 1/AS/1676:1684 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8C3A_115 | 1/AS/1715:1721 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_8C3A_116 | 1/AS/1756:1761 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_8C3A_117 | 1/AS/1788:1792 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8C3A_118 | 1/AS/1840:1847 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8C3A_119 | 1/AS/1858:1864 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8C3A_120 | 1/AS/1919:1924 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8C3A_122 | 1/AS/2088:2092 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8C3A_123 | 1/AS/2113:2123 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8C3A_124 | 1/AS/2142:2148 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8C3A_125 | 1/AS/2198:2203 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8C3A_126 | 1/AS/2231:2241 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8C3A_127 | 1/AS/2270:2278 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8C3A_128 | 1/AS/2347:2356 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8C3A_129 | 1/AS/2447:2454 | No text annotation | ||
| HL_8C3A_130 | 1/AS/2514:2521 | No text annotation | homologous HL_8C3A_053 NA | |
| HL_8C3A_131 | 1/AS/2543:2547 | No text annotation | homologous HL_8C3A_054 NA | |
| HL_8C3A_132 | 1/AS/2588:2596 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8C3A_133 | 1/AS/2605:2617 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8C3A_134 | 1/AS/2645:2653 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8C3A_135 | 1/AS/2665:2672 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8C3A_136 | 1/AS/2696:2704 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8C3A_137 | 1/AS/2716:2721 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8C3A_138 | 1/AS/2748:2756 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8C3A_139 | 1/AS/2812:2820 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8C3A_140 | 1/AS/2869:2876 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8C3A_141 | 1/AS/2892:2898 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_8C3A_142 | 1/AS/2935:2940 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8C3A_143 | 1/AS/2997:3002 | GNRA | geometric HL_5TBW_065 NA | |
| HL_8C3A_144 | 1/AS/3040:3045 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8C3A_145 | 1/AS/3082:3096 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8C3A_146 | 1/AS/3161:3166 | No text annotation | ||
| HL_8C3A_147 | 1/AS/3205:3212 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8C3A_148 | 1/AS/3268:3276 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_8C3A_149 | 1/AS/3315:3318 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_8C3A_233 | 1/AT/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8C3A_150 | 1/AT/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8C3A_151 | 1/AT/88:93 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8C3A_234 | 1/AU/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_8C3A_152 | 1/AU/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_8C3A_153 | 1/AU/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8C3A_154 | 1/AU/124:129 | No text annotation | homologous HL_8C3A_077 NA | |
| HL_8C3A_155 | 1/B/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8C3A_156 | 1/B/70:81 | No text annotation | homologous HL_8C3A_193 NA | |
| HL_8C3A_157 | 1/B/152:158 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8C3A_158 | 1/B/188:193 | No text annotation | homologous HL_8C3A_195 NA | |
| HL_8C3A_159 | 1/B/227:234 | No text annotation | ||
| HL_8C3A_160 | 1/B/241:248 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8C3A_161 | 1/B/274:277 | Mini UNCG | geometric HL_5AH5_007 HL_48778.2 | |
| HL_8C3A_162 | 1/B/328:336 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8C3A_163 | 1/B/366:371 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8C3A_164 | 1/B/391:402 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8C3A_165 | 1/B/412:417 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8C3A_166 | 1/B/448:454 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8C3A_168 | 1/B/518:530 | No text annotation | geometric HL_4V88_199 NA | |
| HL_8C3A_169 | 1/B/567:572 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8C3A_171 | 1/B/700:721 | No text annotation | ||
| HL_8C3A_172 | 1/B/749:757 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8C3A_173 | 1/B/762:767 | No text annotation | homologous HL_8C3A_209 NA | |
| HL_8C3A_174 | 1/B/813:829 | No text annotation | homologous HL_8C3A_210 NA | |
| HL_8C3A_175 | 1/B/885:894 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8C3A_176 | 1/B/922:927 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8C3A_177 | 1/B/982:992 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8C3A_235 | 1/B/1040:1049 | No text annotation | homologous HL_8C3A_236 NA | |
| HL_8C3A_179 | 1/B/1069:1074 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8C3A_180 | 1/B/1106:1111 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8C3A_181 | 1/B/1173:1182 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8C3A_182 | 1/B/1223:1232 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8C3A_183 | 1/B/1281:1286 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8C3A_184 | 1/B/1294:1301 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8C3A_185 | 1/B/1344:1349 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_8C3A_186 | 1/B/1382:1388 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_8C3A_187 | 1/B/1488:1493 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8C3A_188 | 1/B/1537:1548 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8C3A_189 | 1/B/1581:1589 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8C3A_191 | 1/B/1765:1770 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8C3A_192 | 1/CM/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8C3A_193 | 1/CM/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_8C3A_194 | 1/CM/152:158 | GNRA related | ||
| HL_8C3A_195 | 1/CM/188:193 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_8C3A_196 | 1/CM/228:233 | No text annotation | homologous HL_8CRE_195 HL_50006.2 | |
| HL_8C3A_197 | 1/CM/241:248 | T-loop with 1 bulged base | ||
| HL_8C3A_198 | 1/CM/274:277 | Mini UNCG | ||
| HL_8C3A_199 | 1/CM/328:336 | GNRA related | ||
| HL_8C3A_200 | 1/CM/366:371 | GNRA variation | ||
| HL_8C3A_201 | 1/CM/391:402 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8C3A_202 | 1/CM/412:417 | UNCG | ||
| HL_8C3A_203 | 1/CM/448:454 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8C3A_204 | 1/CM/487:495 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8C3A_205 | 1/CM/518:530 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8C3A_206 | 1/CM/567:572 | GNRA variation | ||
| HL_8C3A_207 | 1/CM/701:720 | No text annotation | homologous HL_8CRE_206 HL_85461.1 | |
| HL_8C3A_208 | 1/CM/749:757 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8C3A_209 | 1/CM/762:767 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_8C3A_210 | 1/CM/813:829 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_8C3A_211 | 1/CM/885:894 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8C3A_212 | 1/CM/922:927 | GNRA | ||
| HL_8C3A_213 | 1/CM/982:992 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8C3A_236 | 1/CM/1040:1049 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8C3A_215 | 1/CM/1069:1074 | GNRA | ||
| HL_8C3A_216 | 1/CM/1106:1111 | GNRA | ||
| HL_8C3A_217 | 1/CM/1173:1182 | No text annotation | homologous HL_4V88_212 NA | |
| HL_8C3A_218 | 1/CM/1223:1232 | Anticodon loop related | ||
| HL_8C3A_219 | 1/CM/1281:1286 | GNRA | ||
| HL_8C3A_220 | 1/CM/1294:1301 | T-loop related | ||
| HL_8C3A_221 | 1/CM/1344:1349 | No text annotation | homologous HL_4V88_216 NA | |
| HL_8C3A_222 | 1/CM/1382:1388 | GNRA | homologous HL_4V88_217 NA | |
| HL_8C3A_223 | 1/CM/1488:1493 | GNRA | ||
| HL_8C3A_224 | 1/CM/1537:1548 | No text annotation | homologous HL_4V88_219 NA | |
| HL_8C3A_225 | 1/CM/1581:1589 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8C3A_227 | 1/CM/1765:1770 | GNRA variation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C3A_044 | Mini UNCG | ||
| HL_8C3A_075 | No text annotation | ||
| HL_8C3A_231 | No text annotation | ||
| HL_8C3A_100 | No text annotation | ||
| HL_8C3A_121 | No text annotation | ||
| HL_8C3A_167 | No text annotation | ||
| HL_8C3A_170 | No text annotation | ||
| HL_8C3A_178 | No text annotation | ||
| HL_8C3A_190 | No text annotation | ||
| HL_8C3A_214 | No text annotation | ||
| HL_8C3A_226 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C3A_002 | 1/1/6:7, 1/4/150:152 | Single bulged C | ||
| IL_8C3A_003 | 1/1/12:14, 1/4/144:145 | Single bulged U | ||
| IL_8C3A_004 | 1/1/26:27, 1/1/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_8C3A_005 | 1/1/30:37, 1/1/44:52 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_8C3A_006 | 1/1/81:88, 1/1/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_8C3A_007 | 1/1/122:123, 1/1/143:148 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_8C3A_008 | 1/1/124:126, 1/1/140:142 | Isolated non-canonical cWW pair | ||
| IL_8C3A_009 | 1/1/161:165, 1/1/256:259 | No text annotation | homologous IL_8CRE_009 IL_68909.1 | |
| IL_8C3A_010 | 1/1/168:169, 1/1/248:253 | No text annotation | homologous IL_8CRE_010 IL_70376.1 | |
| IL_8C3A_011 | 1/1/176:177, 1/1/238:241 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_8C3A_012 | 1/1/177:178, 1/1/236:238 | Single stack bend | ||
| IL_8C3A_013 | 1/1/188:190, 1/1/203:204 | Single bulged U | ||
| IL_8C3A_014 | 1/1/337:339, 1/4/25:26 | Single bulged A | ||
| IL_8C3A_015 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8C3A_016 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW | ||
| IL_8C3A_017 | 1/1/439:442, 1/1/487:488 | Minor groove platform | ||
| IL_8C3A_018 | 1/1/445:448, 1/1/481:484 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_019 | 1/1/505:507, 1/1/578:579 | Single bulged A | ||
| IL_8C3A_020 | 1/1/508:509, 1/1/575:577 | Single bulged A | ||
| IL_8C3A_021 | 1/1/513:522, 1/1/564:571 | No text annotation | homologous IL_8CRE_021 IL_85879.1 | |
| IL_8C3A_022 | 1/1/527:534, 1/1/551:559 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_8C3A_023 | 1/1/666:668, 1/1/788:790 | Isolated non-canonical cWW pair | ||
| IL_8C3A_024 | 1/1/678:682, 1/1/694:698 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_8C3A_025 | 1/1/723:726, 1/1/737:741 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_8C3A_026 | 1/1/748:749, 1/1/775:777 | Single bulged A | ||
| IL_8C3A_027 | 1/1/751:752, 1/1/771:773 | Single bulged U | ||
| IL_8C3A_028 | 1/1/754:759, 1/1/764:769 | No text annotation | homologous IL_5TBW_026 NA | |
| IL_8C3A_029 | 1/1/799:801, 1/1/934:936 | Isolated non-canonical cWW pair | ||
| IL_8C3A_030 | 1/1/801:805, 1/1/927:934 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_8C3A_031 | 1/1/824:825, 1/1/891:893 | Single bulged A | ||
| IL_8C3A_032 | 1/1/829:830, 1/1/855:857 | Single bulged G | ||
| IL_8C3A_033 | 1/1/830:834, 1/1/851:855 | Triple sheared | ||
| IL_8C3A_034 | 1/1/865:868, 1/1/884:886 | Major groove platform with extra cWW | ||
| IL_8C3A_035 | 1/1/869:871, 1/1/882:883 | Single bulged U | ||
| IL_8C3A_036 | 1/1/903:905, 1/1/915:919 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_8C3A_037 | 1/1/950:952, 1/1/961:963 | Isolated non-canonical cWW pair | ||
| IL_8C3A_038 | 1/1/965:966, 1/1/1107:1109 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_8C3A_039 | 1/1/973:978, 1/1/1097:1100 | Kink-turn related | ||
| IL_8C3A_040 | 1/1/979:981, 1/1/1095:1096 | Single bulged G | ||
| IL_8C3A_041 | 1/1/987:993, 1/1/1048:1054 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_8C3A_042 | 1/1/993:994, 1/1/1046:1048 | Minor groove platform | ||
| IL_8C3A_043 | 1/1/995:1000, 1/1/1042:1045 | C-loop with bulged stacked A's | ||
| IL_8C3A_481 | 1/1/1002:1005, 1/1/1037:1040 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_8C3A_045 | 1/1/1005:1007, 1/1/1035:1037 | Isolated non-canonical cWW pair | ||
| IL_8C3A_508 | 1/1/1010:1014, 1/1/1030:1032 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_8C3A_047 | 1/1/1065:1067, 1/1/1083:1085 | Isolated non-canonical cWW pair | ||
| IL_8C3A_048 | 1/1/1070:1072, 1/1/1079:1080 | Single bulged G | ||
| IL_8C3A_049 | 1/1/1116:1118, 1/1/1132:1134 | Isolated non-canonical cWW pair | ||
| IL_8C3A_051 | 1/1/1163:1167, 1/1/1324:1328 | UAA/GAN | ||
| IL_8C3A_052 | 1/1/1169:1176, 1/1/1321:1322 | SSU/LSU pseudoknot | ||
| IL_8C3A_053 | 1/1/1176:1178, 1/1/1320:1321 | Single bulged U | ||
| IL_8C3A_054 | 1/1/1183:1190, 1/1/1310:1315 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_8C3A_055 | 1/1/1190:1201, 1/1/1295:1310 | No text annotation | homologous IL_5TBW_052 NA | |
| IL_8C3A_056 | 1/1/1203:1205, 1/1/1292:1293 | Single bulged U | ||
| IL_8C3A_057 | 1/1/1214:1222, 1/1/1279:1283 | Kink-turn | ||
| IL_8C3A_058 | 1/1/1230:1234, 1/1/1246:1250 | No text annotation | geometric IL_4V9F_043 NA | |
| IL_8C3A_059 | 1/1/1258:1262, 1/1/1271:1273 | Major groove platform with extra cWW | ||
| IL_8C3A_060 | 1/1/1339:1342, 1/1/1354:1357 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_061 | 1/1/1372:1374, 1/1/1424:1427 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8C3A_062 | 1/1/1381:1383, 1/1/1416:1417 | Single bulged A | ||
| IL_8C3A_063 | 1/1/1384:1391, 1/1/1411:1415 | Kink-turn | ||
| IL_8C3A_064 | 1/1/1394:1397, 1/1/1406:1408 | Isolated non-canonical cWW pair | ||
| IL_8C3A_065 | 1/1/1440:1446, 1/1/2332:2337 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_8C3A_482 | 1/1/1497:1501, 1/1/1509:1511 | C-loop | ||
| IL_8C3A_067 | 1/1/1528:1532, 1/1/1581:1586 | UAA/GAN | ||
| IL_8C3A_068 | 1/1/1556:1558, 1/1/1573:1574 | Single bulged U | ||
| IL_8C3A_070 | 1/1/1614:1617, 1/1/1820:1822 | Other IL | homologous IL_5TBW_064 NA | |
| IL_8C3A_483 | 1/1/1619:1620, 1/1/1815:1818 | No text annotation | homologous IL_5TBW_503 NA | |
| IL_8C3A_072 | 1/1/1623:1627, 1/1/1807:1812 | No text annotation | homologous IL_5TBW_066 NA | |
| IL_8C3A_073 | 1/1/1641:1645, 1/1/1802:1806 | Triple sheared | ||
| IL_8C3A_074 | 1/1/1657:1659, 1/1/1782:1784 | Isolated non-canonical cWW pair | ||
| IL_8C3A_075 | 1/1/1665:1666, 1/1/1774:1776 | Single bulged C | ||
| IL_8C3A_076 | 1/1/1666:1667, 1/1/1772:1774 | Single stack bend | ||
| IL_8C3A_077 | 1/1/1690:1694, 1/1/1743:1748 | No text annotation | homologous IL_5TBW_071 NA | |
| IL_8C3A_078 | 1/1/1698:1703, 1/1/1733:1739 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_8C3A_079 | 1/1/1707:1713, 1/1/1723:1729 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8C3A_080 | 1/1/1879:1885, 1/1/2324:2327 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_8C3A_081 | 1/1/1891:1893, 1/1/2316:2318 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_8C3A_082 | 1/1/1894:1897, 1/1/2314:2315 | Major groove platform; stack outside cWW | ||
| IL_8C3A_484 | 1/1/1894:1902, 1/1/2311:2315 | No text annotation | homologous IL_5TBW_474 NA | |
| IL_8C3A_083 | 1/1/1897:1902, 1/1/2311:2314 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8C3A_084 | 1/1/1914:1919, 1/1/1924:1930 | tSH-tSH-tHH-tHS | homologous IL_5TBW_078 NA | |
| IL_8C3A_085 | 1/1/1936:1938, 1/1/2084:2086 | Isolated non-canonical cWW pair | ||
| IL_8C3A_086 | 1/1/1943:1944, 1/1/2076:2079 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_8C3A_087 | 1/1/2106:2107, 1/1/2301:2303 | Single bulged A | ||
| IL_8C3A_088 | 1/1/2134:2139, 1/1/2151:2158 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8C3A_089 | 1/1/2174:2177, 1/1/2223:2224 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8C3A_090 | 1/1/2178:2179, 1/1/2219:2222 | Multiple bulged bases | ||
| IL_8C3A_091 | 1/1/2182:2184, 1/1/2215:2216 | Single stack bend | ||
| IL_8C3A_092 | 1/1/2184:2188, 1/1/2213:2215 | No text annotation | homologous IL_8CRE_092 IL_90351.1 | |
| IL_8C3A_093 | 1/1/2189:2195, 1/1/2206:2212 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_8C3A_094 | 1/1/2254:2255, 1/1/2285:2288 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_8C3A_095 | 1/1/2255:2266, 1/1/2282:2285 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_8C3A_096 | 1/1/2369:2372, 1/1/2958:2960 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_8C3A_097 | 1/1/2374:2376, 1/1/2953:2956 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_8C3A_098 | 1/1/2387:2389, 1/1/2783:2784 | Single bulged U | ||
| IL_8C3A_099 | 1/1/2390:2391, 1/1/2779:2782 | Minor groove platform | ||
| IL_8C3A_100 | 1/1/2401:2403, 1/1/2576:2579 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_8C3A_102 | 1/1/2422:2426, 1/1/2477:2481 | No text annotation | homologous IL_8CRE_101 IL_68909.1 | |
| IL_8C3A_509 | 1/1/2426:2428, 1/1/2475:2477 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_8C3A_104 | 1/1/2429:2443, 1/1/2470:2474 | Other IL | ||
| IL_8C3A_485 | 1/1/2429:2447, 1/1/2454:2474 | No text annotation | ||
| IL_8C3A_105 | 1/1/2443:2447, 1/1/2454:2470 | Kink-turn related | ||
| IL_8C3A_106 | 1/1/2498:2504, 1/1/2556:2559 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_8C3A_107 | 1/1/2586:2587, 1/1/2597:2599 | Single bulged A | ||
| IL_8C3A_108 | 1/1/2638:2640, 1/1/2658:2662 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_8C3A_109 | 1/1/2690:2693, 1/1/2707:2710 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_110 | 1/1/2742:2745, 1/1/2759:2760 | Single stack bend with bulge | ||
| IL_8C3A_111 | 1/1/2795:2798, 1/1/2835:2839 | No text annotation | homologous IL_8CRE_111 IL_68909.1 | |
| IL_8C3A_112 | 1/1/2798:2800, 1/1/2834:2835 | Major groove platform | ||
| IL_8C3A_113 | 1/1/2800:2802, 1/1/2830:2834 | Major groove minor groove platform with extra cWW | ||
| IL_8C3A_114 | 1/1/2807:2811, 1/1/2821:2825 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_8C3A_115 | 1/1/2848:2849, 1/1/2921:2923 | Major groove platform | ||
| IL_8C3A_116 | 1/1/2851:2853, 1/1/2915:2919 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_8C3A_117 | 1/1/2853:2854, 1/1/2912:2915 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_8C3A_118 | 1/1/2861:2863, 1/1/2884:2886 | Isolated non-canonical cWW pair | ||
| IL_8C3A_486 | 1/1/2861:2864, 1/1/2881:2886 | No text annotation | homologous IL_5TBW_475 NA | |
| IL_8C3A_119 | 1/1/2863:2864, 1/1/2881:2884 | Major groove platform with intercalation | ||
| IL_8C3A_120 | 1/1/2890:2892, 1/1/2898:2900 | Isolated non-canonical cWW pair | ||
| IL_8C3A_122 | 1/1/2932:2933, 1/1/2942:2944 | Single bulged A | ||
| IL_8C3A_123 | 1/1/2976:2979, 1/1/3111:3116 | Double sheared | ||
| IL_8C3A_124 | 1/1/2984:2986, 1/1/3012:3014 | Isolated non-canonical cWW pair | ||
| IL_8C3A_125 | 1/1/2990:2997, 1/1/3002:3008 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C3A_126 | 1/1/3019:3023, 1/1/3063:3066 | Major groove minor groove platform with tHH | ||
| IL_8C3A_127 | 1/1/3026:3031, 1/1/3056:3060 | UAA/GAN related | ||
| IL_8C3A_128 | 1/1/3035:3036, 1/1/3049:3052 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8C3A_129 | 1/1/3075:3079, 1/1/3099:3103 | UAA/GAN | ||
| IL_8C3A_130 | 1/1/3134:3136, 1/1/3249:3251 | Isolated non-canonical cWW pair | ||
| IL_8C3A_131 | 1/1/3147:3149, 1/1/3175:3176 | Single bulged A | ||
| IL_8C3A_132 | 1/1/3149:3158, 1/1/3169:3175 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_8C3A_133 | 1/1/3190:3194, 1/1/3223:3225 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_8C3A_134 | 1/1/3200:3203, 1/1/3214:3217 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_135 | 1/1/3265:3268, 1/1/3276:3279 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_136 | 1/1/3283:3285, 1/1/3352:3353 | Single bulged U | ||
| IL_8C3A_137 | 1/1/3289:3290, 1/1/3346:3348 | Single bulged U | ||
| IL_8C3A_138 | 1/1/3293:3295, 1/1/3338:3343 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_8C3A_139 | 1/1/3297:3302, 1/1/3332:3336 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_8C3A_140 | 1/1/3305:3307, 1/1/3328:3329 | Single bulged U | ||
| IL_8C3A_141 | 1/1/3307:3310, 1/1/3325:3328 | Double sheared; A in syn | ||
| IL_8C3A_142 | 1/1/3314:3315, 1/1/3318:3321 | Multiple bulged bases | ||
| IL_8C3A_143 | 1/3/15:16, 1/3/63:65 | Single bulged A | ||
| IL_8C3A_144 | 1/3/21:27, 1/3/53:58 | Minor groove platform related | ||
| IL_8C3A_145 | 1/3/28:29, 1/3/49:52 | No text annotation | homologous IL_8OI5_136 IL_15052.4 | |
| IL_8C3A_146 | 1/3/29:30, 1/3/47:49 | Single stack bend | ||
| IL_8C3A_147 | 1/3/32:36, 1/3/41:45 | No text annotation | homologous IL_8OI5_138 IL_58103.11 | |
| IL_8C3A_148 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C3A_149 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | ||
| IL_8C3A_150 | 1/4/44:64, 1/4/96:100 | No text annotation | ||
| IL_8C3A_151 | 1/4/64:66, 1/4/93:96 | No text annotation | homologous IL_8CRE_150 IL_07785.1 | |
| IL_8C3A_152 | 1/4/67:68, 1/4/90:92 | Single bulged C | ||
| IL_8C3A_154 | 1/AS/6:7, 1/AU/150:152 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_8C3A_155 | 1/AS/12:14, 1/AU/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8C3A_156 | 1/AS/26:27, 1/AS/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8C3A_157 | 1/AS/30:37, 1/AS/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_8C3A_158 | 1/AS/81:88, 1/AS/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8C3A_159 | 1/AS/122:123, 1/AS/143:148 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8C3A_160 | 1/AS/124:126, 1/AS/140:142 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8C3A_161 | 1/AS/161:165, 1/AS/256:259 | No text annotation | homologous IL_8C3A_009 NA | |
| IL_8C3A_162 | 1/AS/168:169, 1/AS/248:253 | No text annotation | homologous IL_8C3A_010 NA | |
| IL_8C3A_163 | 1/AS/176:177, 1/AS/238:241 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
| IL_8C3A_164 | 1/AS/177:178, 1/AS/236:238 | Single stack bend | homologous IL_8C3A_012 NA | |
| IL_8C3A_165 | 1/AS/188:190, 1/AS/203:204 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8C3A_166 | 1/AS/337:339, 1/AU/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8C3A_167 | 1/AS/376:379, 1/AS/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_8C3A_168 | 1/AS/404:410, 1/AU/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8C3A_169 | 1/AS/439:442, 1/AS/487:488 | Minor groove platform | homologous IL_8C3A_017 NA | |
| IL_8C3A_170 | 1/AS/445:449, 1/AS/480:484 | No text annotation | ||
| IL_8C3A_171 | 1/AS/452:454, 1/AS/473:477 | No text annotation | ||
| IL_8C3A_172 | 1/AS/505:507, 1/AS/578:579 | Single bulged A | homologous IL_8C3A_019 NA | |
| IL_8C3A_173 | 1/AS/508:509, 1/AS/575:577 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8C3A_174 | 1/AS/513:522, 1/AS/564:571 | No text annotation | homologous IL_8C3A_021 NA | |
| IL_8C3A_175 | 1/AS/527:534, 1/AS/551:559 | No text annotation | homologous IL_8C3A_022 NA | |
| IL_8C3A_176 | 1/AS/666:668, 1/AS/788:790 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8C3A_177 | 1/AS/678:682, 1/AS/694:698 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_8C3A_178 | 1/AS/723:726, 1/AS/737:741 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8C3A_179 | 1/AS/748:749, 1/AS/775:777 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8C3A_180 | 1/AS/751:752, 1/AS/771:773 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8C3A_181 | 1/AS/754:759, 1/AS/764:769 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8C3A_182 | 1/AS/799:801, 1/AS/934:936 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_8C3A_183 | 1/AS/801:805, 1/AS/927:934 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8C3A_184 | 1/AS/824:825, 1/AS/891:893 | Single bulged A | geometric IL_7A0S_016 IL_31462.5 | |
| IL_8C3A_185 | 1/AS/829:830, 1/AS/855:857 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8C3A_186 | 1/AS/830:834, 1/AS/851:855 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_8C3A_187 | 1/AS/865:868, 1/AS/884:886 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8C3A_188 | 1/AS/869:871, 1/AS/882:883 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8C3A_189 | 1/AS/903:905, 1/AS/915:919 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8C3A_190 | 1/AS/950:952, 1/AS/961:963 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8C3A_191 | 1/AS/965:966, 1/AS/1107:1109 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8C3A_192 | 1/AS/973:978, 1/AS/1097:1100 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_8C3A_193 | 1/AS/979:981, 1/AS/1095:1096 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8C3A_194 | 1/AS/987:993, 1/AS/1048:1054 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_8C3A_195 | 1/AS/993:994, 1/AS/1046:1048 | Minor groove platform | geometric IL_6DLR_003 IL_51454.2 | |
| IL_8C3A_196 | 1/AS/995:1000, 1/AS/1042:1045 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8C3A_197 | 1/AS/1002:1005, 1/AS/1037:1040 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_8C3A_198 | 1/AS/1005:1007, 1/AS/1035:1037 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8C3A_199 | 1/AS/1010:1014, 1/AS/1030:1032 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_8C3A_200 | 1/AS/1065:1067, 1/AS/1083:1085 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8C3A_201 | 1/AS/1070:1072, 1/AS/1079:1080 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8C3A_202 | 1/AS/1116:1118, 1/AS/1132:1134 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8C3A_204 | 1/AS/1163:1167, 1/AS/1324:1328 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8C3A_205 | 1/AS/1169:1176, 1/AS/1321:1322 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_8C3A_206 | 1/AS/1176:1178, 1/AS/1320:1321 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_8C3A_207 | 1/AS/1183:1190, 1/AS/1310:1315 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8C3A_208 | 1/AS/1190:1201, 1/AS/1295:1310 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8C3A_209 | 1/AS/1203:1205, 1/AS/1292:1293 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8C3A_210 | 1/AS/1214:1223, 1/AS/1278:1283 | No text annotation | ||
| IL_8C3A_211 | 1/AS/1230:1234, 1/AS/1246:1250 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_8C3A_212 | 1/AS/1258:1262, 1/AS/1271:1273 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_8C3A_213 | 1/AS/1339:1342, 1/AS/1354:1357 | Tandem non-canonical cWW pairs | homologous IL_8C3A_060 NA | |
| IL_8C3A_214 | 1/AS/1372:1374, 1/AS/1424:1427 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8C3A_215 | 1/AS/1381:1383, 1/AS/1416:1417 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8C3A_216 | 1/AS/1384:1391, 1/AS/1411:1415 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8C3A_217 | 1/AS/1394:1397, 1/AS/1406:1408 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8C3A_218 | 1/AS/1440:1446, 1/AS/2332:2337 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8C3A_487 | 1/AS/1497:1501, 1/AS/1509:1511 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8C3A_220 | 1/AS/1528:1532, 1/AS/1581:1586 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8C3A_221 | 1/AS/1556:1558, 1/AS/1573:1574 | Single bulged U | homologous IL_8C3A_068 NA | |
| IL_8C3A_223 | 1/AS/1614:1617, 1/AS/1820:1822 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8C3A_488 | 1/AS/1619:1620, 1/AS/1815:1818 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8C3A_225 | 1/AS/1623:1627, 1/AS/1807:1812 | No text annotation | homologous IL_5TBW_066 NA | |
| IL_8C3A_226 | 1/AS/1641:1645, 1/AS/1802:1806 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8C3A_227 | 1/AS/1657:1659, 1/AS/1782:1784 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8C3A_228 | 1/AS/1665:1666, 1/AS/1774:1776 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8C3A_229 | 1/AS/1666:1667, 1/AS/1772:1774 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_8C3A_230 | 1/AS/1690:1694, 1/AS/1743:1748 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8C3A_231 | 1/AS/1698:1703, 1/AS/1733:1739 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_8C3A_232 | 1/AS/1707:1713, 1/AS/1723:1729 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_8C3A_233 | 1/AS/1879:1885, 1/AS/2324:2327 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8C3A_234 | 1/AS/1891:1893, 1/AS/2316:2318 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8C3A_235 | 1/AS/1894:1897, 1/AS/2314:2315 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_8C3A_489 | 1/AS/1894:1902, 1/AS/2311:2315 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8C3A_236 | 1/AS/1897:1902, 1/AS/2311:2314 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8C3A_237 | 1/AS/1914:1919, 1/AS/1924:1930 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_8C3A_238 | 1/AS/1936:1938, 1/AS/2084:2086 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8C3A_239 | 1/AS/1943:1944, 1/AS/2076:2079 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8C3A_240 | 1/AS/2106:2107, 1/AS/2301:2303 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8C3A_241 | 1/AS/2134:2139, 1/AS/2151:2158 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8C3A_242 | 1/AS/2174:2177, 1/AS/2223:2224 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8C3A_243 | 1/AS/2178:2179, 1/AS/2219:2222 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8C3A_244 | 1/AS/2182:2184, 1/AS/2215:2216 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8C3A_490 | 1/AS/2182:2188, 1/AS/2213:2216 | No text annotation | ||
| IL_8C3A_245 | 1/AS/2184:2188, 1/AS/2213:2215 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_8C3A_246 | 1/AS/2189:2195, 1/AS/2206:2212 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8C3A_247 | 1/AS/2254:2255, 1/AS/2285:2288 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_8C3A_248 | 1/AS/2255:2266, 1/AS/2282:2285 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8C3A_249 | 1/AS/2369:2372, 1/AS/2958:2960 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8C3A_250 | 1/AS/2374:2376, 1/AS/2953:2956 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_8C3A_251 | 1/AS/2387:2389, 1/AS/2783:2784 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8C3A_252 | 1/AS/2390:2391, 1/AS/2779:2782 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8C3A_253 | 1/AS/2401:2403, 1/AS/2576:2579 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8C3A_254 | 1/AS/2422:2423, 1/AS/2479:2481 | No text annotation | ||
| IL_8C3A_492 | 1/AS/2424:2447, 1/AS/2454:2478 | No text annotation | ||
| IL_8C3A_255 | 1/AS/2498:2504, 1/AS/2556:2559 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8C3A_256 | 1/AS/2586:2587, 1/AS/2597:2599 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8C3A_257 | 1/AS/2638:2640, 1/AS/2658:2662 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8C3A_258 | 1/AS/2690:2693, 1/AS/2707:2710 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_8C3A_259 | 1/AS/2742:2745, 1/AS/2759:2760 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_8C3A_260 | 1/AS/2795:2796, 1/AS/2837:2839 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_8C3A_493 | 1/AS/2795:2798, 1/AS/2835:2839 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8C3A_261 | 1/AS/2796:2798, 1/AS/2835:2837 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_8C3A_262 | 1/AS/2798:2800, 1/AS/2834:2835 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8C3A_263 | 1/AS/2800:2802, 1/AS/2830:2834 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_8C3A_264 | 1/AS/2807:2811, 1/AS/2821:2825 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8C3A_265 | 1/AS/2848:2849, 1/AS/2921:2923 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8C3A_266 | 1/AS/2851:2853, 1/AS/2915:2919 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8C3A_267 | 1/AS/2853:2854, 1/AS/2912:2915 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_8C3A_268 | 1/AS/2861:2863, 1/AS/2884:2886 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_8C3A_494 | 1/AS/2861:2864, 1/AS/2881:2886 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_8C3A_269 | 1/AS/2863:2864, 1/AS/2881:2884 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_8C3A_270 | 1/AS/2890:2892, 1/AS/2898:2900 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8C3A_272 | 1/AS/2932:2933, 1/AS/2942:2944 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_8C3A_273 | 1/AS/2976:2979, 1/AS/3111:3116 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8C3A_274 | 1/AS/2984:2986, 1/AS/3012:3014 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8C3A_275 | 1/AS/2990:2997, 1/AS/3002:3008 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8C3A_276 | 1/AS/3019:3023, 1/AS/3063:3066 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8C3A_277 | 1/AS/3026:3031, 1/AS/3056:3060 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8C3A_278 | 1/AS/3035:3036, 1/AS/3049:3052 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8C3A_279 | 1/AS/3075:3079, 1/AS/3099:3103 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8C3A_280 | 1/AS/3134:3136, 1/AS/3249:3251 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8C3A_281 | 1/AS/3147:3149, 1/AS/3175:3176 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_8C3A_282 | 1/AS/3149:3158, 1/AS/3169:3175 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_8C3A_283 | 1/AS/3190:3194, 1/AS/3223:3225 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8C3A_284 | 1/AS/3200:3203, 1/AS/3214:3217 | Tandem non-canonical cWW pairs | homologous IL_8C3A_134 NA | |
| IL_8C3A_285 | 1/AS/3265:3268, 1/AS/3276:3279 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_8C3A_286 | 1/AS/3283:3285, 1/AS/3352:3353 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8C3A_287 | 1/AS/3289:3290, 1/AS/3346:3348 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_8C3A_288 | 1/AS/3293:3295, 1/AS/3338:3343 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8C3A_289 | 1/AS/3297:3302, 1/AS/3332:3336 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8C3A_290 | 1/AS/3305:3307, 1/AS/3328:3329 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8C3A_291 | 1/AS/3307:3310, 1/AS/3325:3328 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_8C3A_292 | 1/AS/3314:3315, 1/AS/3318:3321 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_8C3A_293 | 1/AT/15:16, 1/AT/63:65 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8C3A_294 | 1/AT/21:27, 1/AT/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8C3A_295 | 1/AT/28:29, 1/AT/49:52 | No text annotation | homologous IL_8C3A_145 NA | |
| IL_8C3A_296 | 1/AT/29:30, 1/AT/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_8C3A_297 | 1/AT/32:36, 1/AT/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_8C3A_298 | 1/AT/72:80, 1/AT/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_8C3A_299 | 1/AT/84:87, 1/AT/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8C3A_300 | 1/AU/44:64, 1/AU/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8C3A_301 | 1/AU/64:66, 1/AU/93:96 | No text annotation | homologous IL_8C3A_151 NA | |
| IL_8C3A_302 | 1/AU/67:68, 1/AU/90:92 | Single bulged C | homologous IL_8C3A_152 NA | |
| IL_8C3A_303 | 1/B/24:26, 1/B/598:599 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_8C3A_304 | 1/B/35:37, 1/B/469:471 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8C3A_305 | 1/B/37:41, 1/B/464:469 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8C3A_306 | 1/B/42:48, 1/B/429:431 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8C3A_307 | 1/B/50:52, 1/B/426:427 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8C3A_308 | 1/B/58:63, 1/B/87:89 | No text annotation | homologous IL_8C3A_397 NA | |
| IL_8C3A_309 | 1/B/64:69, 1/B/82:86 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8C3A_310 | 1/B/109:112, 1/B/300:303 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8C3A_311 | 1/B/113:116, 1/B/298:299 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8C3A_312 | 1/B/117:122, 1/B/293:297 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8C3A_313 | 1/B/141:147, 1/B/163:170 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8C3A_314 | 1/B/147:150, 1/B/160:163 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_8C3A_315 | 1/B/184:187, 1/B/194:197 | Double sheared | homologous IL_8C3A_404 NA | |
| IL_8C3A_316 | 1/B/202:204, 1/B/257:261 | Major groove platform with extra cWW | homologous IL_8C3A_405 NA | |
| IL_8C3A_317 | 1/B/204:206, 1/B/255:257 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_8C3A_318 | 1/B/263:266, 1/B/285:287 | Isolated cWH basepair | homologous IL_8C3A_407 NA | |
| IL_8C3A_319 | 1/B/268:271, 1/B/281:283 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8C3A_320 | 1/B/273:274, 1/B/277:279 | Single bulged U | homologous IL_8C3A_409 NA | |
| IL_8C3A_321 | 1/B/309:314, 1/B/346:353 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8C3A_322 | 1/B/316:321, 1/B/343:344 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8C3A_323 | 1/B/361:363, 1/B/374:379 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8C3A_324 | 1/B/387:389, 1/B/404:406 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8C3A_325 | 1/B/409:411, 1/B/418:420 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8C3A_326 | 1/B/437:439, 1/B/461:462 | Single bulged U | homologous IL_8C3A_415 NA | |
| IL_8C3A_327 | 1/B/441:445, 1/B/458:459 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8C3A_328 | 1/B/445:446, 1/B/456:458 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_8C3A_329 | 1/B/479:480, 1/B/503:505 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_8C3A_330 | 1/B/485:487, 1/B/496:498 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_8C3A_495 | 1/B/515:516, 1/B/531:533 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8C3A_332 | 1/B/516:518, 1/B/530:531 | Minor groove platform | homologous IL_8C3A_422 NA | |
| IL_8C3A_333 | 1/B/548:555, 1/B/585:586 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_8C3A_334 | 1/B/555:557, 1/B/584:585 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8C3A_335 | 1/B/560:566, 1/B/573:581 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8C3A_336 | 1/B/614:620, 1/B/1089:1090 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8C3A_337 | 1/B/622:624, 1/B/958:960 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8C3A_338 | 1/B/625:629, 1/B/953:957 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8C3A_340 | 1/B/648:656, 1/B/671:682 | No text annotation | ||
| IL_8C3A_341 | 1/B/731:732, 1/B/786:789 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8C3A_342 | 1/B/733:735, 1/B/783:785 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8C3A_343 | 1/B/736:738, 1/B/778:782 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_8C3A_496 | 1/B/736:744, 1/B/775:782 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8C3A_344 | 1/B/738:744, 1/B/775:778 | No text annotation | homologous IL_8C3A_433 NA | |
| IL_8C3A_345 | 1/B/803:806, 1/B/836:837 | No text annotation | homologous IL_8C3A_434 NA | |
| IL_8C3A_497 | 1/B/853:855, 1/B/942:945 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8C3A_348 | 1/B/856:859, 1/B/938:941 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8C3A_349 | 1/B/859:863, 1/B/935:938 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8C3A_350 | 1/B/870:873, 1/B/909:912 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8C3A_351 | 1/B/878:884, 1/B/895:904 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8C3A_352 | 1/B/970:975, 1/B/999:1001 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8C3A_353 | 1/B/975:979, 1/B/995:999 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_8C3A_354 | 1/B/1019:1021, 1/B/1080:1086 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8C3A_355 | 1/B/1026:1029, 1/B/1059:1062 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8C3A_356 | 1/B/1036:1039, 1/B/1050:1052 | Isolated cWH basepair | homologous IL_8C3A_504 NA | |
| IL_8C3A_357 | 1/B/1096:1103, 1/B/1114:1119 | No text annotation | homologous IL_8C3A_446 NA | |
| IL_8C3A_358 | 1/B/1131:1132, 1/B/1617:1619 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8C3A_359 | 1/B/1134:1136, 1/B/1614:1615 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8C3A_360 | 1/B/1142:1145, 1/B/1604:1608 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8C3A_361 | 1/B/1158:1160, 1/B/1450:1452 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8C3A_362 | 1/B/1163:1164, 1/B/1445:1447 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8C3A_363 | 1/B/1198:1200, 1/B/1434:1436 | Isolated non-canonical cWW pair | geometric IL_6IA2_004 IL_87907.2 | |
| IL_8C3A_364 | 1/B/1209:1219, 1/B/1236:1244 | No text annotation | homologous IL_8C3A_453 NA | |
| IL_8C3A_365 | 1/B/1219:1221, 1/B/1234:1236 | Other IL | homologous IL_8C3A_454 NA | |
| IL_8C3A_366 | 1/B/1253:1255, 1/B/1426:1427 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8C3A_367 | 1/B/1257:1261, 1/B/1422:1424 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8C3A_498 | 1/B/1257:1264, 1/B/1415:1424 | No text annotation | homologous IL_8C3A_505 NA | |
| IL_8C3A_368 | 1/B/1261:1264, 1/B/1415:1422 | No text annotation | homologous IL_8C3A_457 NA | |
| IL_8C3A_369 | 1/B/1265:1266, 1/B/1412:1414 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8C3A_370 | 1/B/1275:1277, 1/B/1308:1310 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8C3A_371 | 1/B/1291:1293, 1/B/1302:1303 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8C3A_372 | 1/B/1324:1328, 1/B/1368:1371 | No text annotation | homologous IL_8C3A_461 NA | |
| IL_8C3A_373 | 1/B/1330:1333, 1/B/1363:1366 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_8C3A_374 | 1/B/1336:1338, 1/B/1355:1360 | No text annotation | homologous IL_8C3A_463 NA | |
| IL_8C3A_376 | 1/B/1375:1377, 1/B/1393:1398 | No text annotation | homologous IL_8C3A_465 NA | |
| IL_8C3A_377 | 1/B/1466:1473, 1/B/1506:1514 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8C3A_378 | 1/B/1474:1481, 1/B/1500:1505 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_8C3A_379 | 1/B/1483:1485, 1/B/1496:1498 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8C3A_500 | 1/B/1527:1532, 1/B/1553:1558 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8C3A_381 | 1/B/1623:1625, 1/B/1751:1754 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8C3A_382 | 1/B/1625:1628, 1/B/1747:1751 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8C3A_383 | 1/B/1629:1631, 1/B/1744:1746 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8C3A_384 | 1/B/1631:1634, 1/B/1740:1744 | No text annotation | homologous IL_8C3A_473 NA | |
| IL_8C3A_385 | 1/B/1637:1639, 1/B/1735:1737 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8C3A_386 | 1/B/1640:1643, 1/B/1731:1734 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8C3A_387 | 1/B/1643:1645, 1/B/1730:1731 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_8C3A_388 | 1/B/1652:1654, 1/B/1721:1723 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8C3A_389 | 1/B/1656:1659, 1/B/1716:1719 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8C3A_390 | 1/B/1662:1665, 1/B/1710:1713 | Tandem non-canonical cWW pairs | homologous IL_8C3A_479 NA | |
| IL_8C3A_391 | 1/B/1665:1669, 1/B/1706:1710 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_8C3A_392 | 1/CM/24:26, 1/CM/598:599 | Single bulged C | ||
| IL_8C3A_393 | 1/CM/35:37, 1/CM/469:471 | Isolated non-canonical cWW pair | ||
| IL_8C3A_394 | 1/CM/37:41, 1/CM/464:469 | Triple sheared related | ||
| IL_8C3A_395 | 1/CM/42:48, 1/CM/429:431 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8C3A_396 | 1/CM/50:52, 1/CM/426:427 | Minor groove platform | ||
| IL_8C3A_397 | 1/CM/58:63, 1/CM/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8C3A_398 | 1/CM/64:69, 1/CM/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8C3A_399 | 1/CM/109:112, 1/CM/300:303 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_400 | 1/CM/113:116, 1/CM/298:299 | Multiple bulged bases | ||
| IL_8C3A_401 | 1/CM/117:122, 1/CM/293:297 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8C3A_402 | 1/CM/141:147, 1/CM/163:170 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_8C3A_403 | 1/CM/147:150, 1/CM/160:163 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_8C3A_404 | 1/CM/184:187, 1/CM/194:197 | Double sheared | ||
| IL_8C3A_405 | 1/CM/202:204, 1/CM/257:261 | Major groove platform with extra cWW | ||
| IL_8C3A_406 | 1/CM/204:206, 1/CM/255:257 | Isolated non-canonical cWW pair | ||
| IL_8C3A_407 | 1/CM/263:266, 1/CM/285:287 | Isolated cWH basepair | ||
| IL_8C3A_408 | 1/CM/268:271, 1/CM/281:283 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8C3A_409 | 1/CM/273:274, 1/CM/277:279 | Single bulged U | ||
| IL_8C3A_410 | 1/CM/309:314, 1/CM/346:353 | Kink-turn with non-sequential stacking | ||
| IL_8C3A_411 | 1/CM/316:321, 1/CM/343:344 | No text annotation | homologous IL_4V88_403 NA | |
| IL_8C3A_412 | 1/CM/361:363, 1/CM/374:379 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8C3A_413 | 1/CM/387:389, 1/CM/404:406 | Isolated cWH basepair | ||
| IL_8C3A_414 | 1/CM/409:411, 1/CM/418:420 | Isolated non-canonical cWW pair | ||
| IL_8C3A_415 | 1/CM/437:439, 1/CM/461:462 | Single bulged U | ||
| IL_8C3A_416 | 1/CM/441:445, 1/CM/458:459 | C-loop | ||
| IL_8C3A_417 | 1/CM/445:446, 1/CM/456:458 | Single bulged G | ||
| IL_8C3A_418 | 1/CM/479:480, 1/CM/503:505 | Single bulged A | ||
| IL_8C3A_419 | 1/CM/485:487, 1/CM/495:498 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8C3A_420 | 1/CM/512:514, 1/CM/534:541 | No text annotation | homologous IL_8CRE_418 IL_86136.1 | |
| IL_8C3A_501 | 1/CM/515:516, 1/CM/531:533 | Minor groove platform | ||
| IL_8C3A_422 | 1/CM/516:518, 1/CM/530:531 | Minor groove platform | ||
| IL_8C3A_423 | 1/CM/548:555, 1/CM/585:586 | SSU/LSU pseudoknot | ||
| IL_8C3A_424 | 1/CM/555:557, 1/CM/584:585 | Single bulged U | ||
| IL_8C3A_425 | 1/CM/560:566, 1/CM/573:581 | Kink-turn related | ||
| IL_8C3A_426 | 1/CM/614:620, 1/CM/1089:1090 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8C3A_427 | 1/CM/622:624, 1/CM/958:960 | Isolated non-canonical cWW pair | ||
| IL_8C3A_428 | 1/CM/625:629, 1/CM/953:957 | tSH-tHW-tHS | ||
| IL_8C3A_502 | 1/CM/648:656, 1/CM/669:682 | No text annotation | homologous IL_8CRE_427 IL_15991.1 | |
| IL_8C3A_429 | 1/CM/656:659, 1/CM/667:669 | No text annotation | ||
| IL_8C3A_430 | 1/CM/731:732, 1/CM/786:789 | Major groove minor groove platform; mini C-loop | ||
| IL_8C3A_431 | 1/CM/733:735, 1/CM/783:785 | Isolated non-canonical cWW pair | ||
| IL_8C3A_432 | 1/CM/736:738, 1/CM/778:782 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_8C3A_503 | 1/CM/736:744, 1/CM/775:782 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8C3A_433 | 1/CM/738:744, 1/CM/775:778 | No text annotation | ||
| IL_8C3A_434 | 1/CM/803:806, 1/CM/836:837 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_8C3A_510 | 1/CM/853:855, 1/CM/942:945 | Isolated cWH basepair | ||
| IL_8C3A_437 | 1/CM/856:859, 1/CM/938:941 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_438 | 1/CM/859:863, 1/CM/935:938 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_439 | 1/CM/870:873, 1/CM/909:912 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_440 | 1/CM/878:884, 1/CM/895:904 | Kink-turn related | ||
| IL_8C3A_441 | 1/CM/970:975, 1/CM/999:1001 | Other IL | homologous IL_4V88_435 NA | |
| IL_8C3A_442 | 1/CM/975:979, 1/CM/995:999 | tSH-tHW-tHS | ||
| IL_8C3A_443 | 1/CM/1019:1021, 1/CM/1080:1086 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8C3A_444 | 1/CM/1026:1029, 1/CM/1059:1062 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_504 | 1/CM/1036:1039, 1/CM/1050:1052 | Isolated cWH basepair | ||
| IL_8C3A_446 | 1/CM/1096:1103, 1/CM/1114:1119 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8C3A_447 | 1/CM/1131:1132, 1/CM/1617:1619 | Single bulged A | ||
| IL_8C3A_448 | 1/CM/1134:1136, 1/CM/1614:1615 | Single bulged G | ||
| IL_8C3A_449 | 1/CM/1142:1145, 1/CM/1604:1608 | C-loop | ||
| IL_8C3A_450 | 1/CM/1158:1160, 1/CM/1450:1452 | Isolated non-canonical cWW pair | ||
| IL_8C3A_451 | 1/CM/1163:1164, 1/CM/1445:1447 | Minor groove platform | ||
| IL_8C3A_452 | 1/CM/1198:1200, 1/CM/1434:1436 | Isolated non-canonical cWW pair | ||
| IL_8C3A_453 | 1/CM/1209:1219, 1/CM/1236:1244 | No text annotation | homologous IL_8CRE_449 IL_04073.1 | |
| IL_8C3A_454 | 1/CM/1219:1221, 1/CM/1234:1236 | Other IL | ||
| IL_8C3A_455 | 1/CM/1253:1255, 1/CM/1426:1427 | Single bulged U | ||
| IL_8C3A_456 | 1/CM/1257:1261, 1/CM/1422:1424 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8C3A_505 | 1/CM/1257:1264, 1/CM/1415:1424 | No text annotation | homologous IL_8CRE_453 IL_66663.1 | |
| IL_8C3A_457 | 1/CM/1261:1264, 1/CM/1415:1422 | No text annotation | homologous IL_8CRE_454 IL_49612.1 | |
| IL_8C3A_458 | 1/CM/1265:1266, 1/CM/1412:1414 | Single bulged A | ||
| IL_8C3A_459 | 1/CM/1275:1277, 1/CM/1308:1310 | Isolated non-canonical cWW pair | ||
| IL_8C3A_460 | 1/CM/1291:1293, 1/CM/1302:1303 | Minor groove platform | ||
| IL_8C3A_461 | 1/CM/1324:1328, 1/CM/1368:1371 | No text annotation | homologous IL_8CRE_458 IL_13404.2 | |
| IL_8C3A_462 | 1/CM/1330:1333, 1/CM/1363:1366 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8C3A_463 | 1/CM/1336:1338, 1/CM/1355:1360 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_8C3A_465 | 1/CM/1375:1377, 1/CM/1393:1398 | No text annotation | homologous IL_8CRE_461 IL_94684.1 | |
| IL_8C3A_466 | 1/CM/1466:1473, 1/CM/1506:1514 | No text annotation | homologous IL_4V88_459 NA | |
| IL_8C3A_467 | 1/CM/1474:1481, 1/CM/1500:1505 | 180 degree turn | ||
| IL_8C3A_468 | 1/CM/1483:1485, 1/CM/1496:1498 | Isolated non-canonical cWW pair | ||
| IL_8C3A_507 | 1/CM/1527:1532, 1/CM/1553:1558 | No text annotation | homologous IL_4V88_462 NA | |
| IL_8C3A_470 | 1/CM/1623:1625, 1/CM/1751:1754 | No text annotation | homologous IL_4V88_463 NA | |
| IL_8C3A_471 | 1/CM/1625:1628, 1/CM/1747:1751 | No text annotation | homologous IL_4V88_464 NA | |
| IL_8C3A_472 | 1/CM/1629:1631, 1/CM/1744:1746 | Isolated non-canonical cWW pair | ||
| IL_8C3A_473 | 1/CM/1631:1634, 1/CM/1740:1744 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_8C3A_474 | 1/CM/1637:1639, 1/CM/1735:1737 | Isolated non-canonical cWW pair | ||
| IL_8C3A_475 | 1/CM/1640:1643, 1/CM/1731:1734 | Double sheared | ||
| IL_8C3A_476 | 1/CM/1643:1645, 1/CM/1730:1731 | Single bulged U | ||
| IL_8C3A_477 | 1/CM/1652:1654, 1/CM/1721:1723 | Isolated non-canonical cWW pair | ||
| IL_8C3A_478 | 1/CM/1656:1659, 1/CM/1716:1719 | Double sheared | ||
| IL_8C3A_479 | 1/CM/1662:1665, 1/CM/1710:1713 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_480 | 1/CM/1665:1669, 1/CM/1706:1710 | Triple sheared |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C3A_001 | No text annotation | ||
| IL_8C3A_044 | No text annotation | ||
| IL_8C3A_046 | No text annotation | ||
| IL_8C3A_050 | Isolated cWS basepair | ||
| IL_8C3A_066 | No text annotation | ||
| IL_8C3A_069 | No text annotation | ||
| IL_8C3A_071 | No text annotation | ||
| IL_8C3A_101 | Isolated non-canonical cWW pair | ||
| IL_8C3A_103 | No text annotation | ||
| IL_8C3A_121 | Isolated non-canonical cWW pair | ||
| IL_8C3A_153 | No text annotation | ||
| IL_8C3A_203 | No text annotation | ||
| IL_8C3A_219 | No text annotation | ||
| IL_8C3A_222 | No text annotation | ||
| IL_8C3A_224 | No text annotation | ||
| IL_8C3A_491 | No text annotation | ||
| IL_8C3A_271 | No text annotation | ||
| IL_8C3A_331 | Minor groove platform with extra cWW | ||
| IL_8C3A_339 | Isolated non-canonical cWW pair | ||
| IL_8C3A_346 | No text annotation | ||
| IL_8C3A_347 | No text annotation | ||
| IL_8C3A_499 | No text annotation | ||
| IL_8C3A_375 | Isolated non-canonical cWW pair | ||
| IL_8C3A_380 | No text annotation | ||
| IL_8C3A_421 | Minor groove platform with extra cWW | ||
| IL_8C3A_435 | Isolated cWH basepair | ||
| IL_8C3A_436 | Tandem non-canonical cWW pairs | ||
| IL_8C3A_445 | No text annotation | ||
| IL_8C3A_506 | No text annotation | ||
| IL_8C3A_464 | Isolated non-canonical cWW pair | ||
| IL_8C3A_469 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C3A_001 | 1/1/112:122, 1/1/148:157, 1/1/263:267 | No text annotation | homologous J3_5TBW_001 NA | |
| J3_8C3A_045 | 1/1/112:123, 1/1/143:157, 1/1/263:267 | No text annotation | ||
| J3_8C3A_046 | 1/1/184:188, 1/1/204:213, 1/1/225:230 | No text annotation | homologous J3_8CRE_003 J3_75408.1 | |
| J3_8C3A_047 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_5TBW_061 NA | |
| J3_8C3A_048 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8C3A_049 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_5TBW_062 NA | |
| J3_8C3A_002 | 1/1/436:439, 1/1/488:490, 1/1/616:621 | No text annotation | homologous J3_8CRE_007 J3_28315.1 | |
| J3_8C3A_050 | 1/1/497:498, 1/1/586:595, 1/1/604:609 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_8C3A_003 | 1/1/810:816, 1/1/901:903, 1/1/919:922 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_8C3A_004 | 1/1/825:827, 1/1/859:863, 1/1/888:891 | No text annotation | geometric J3_7RQB_005 NA | |
| J3_8C3A_051 | 1/1/982:983, 1/1/1058:1062, 1/1/1088:1094 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_8C3A_005 | 1/1/1226:1228, 1/1/1252:1258, 1/1/1273:1275 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_8C3A_006 | 1/1/1475:1481, 1/1/1853:1855, 1/1/1867:1870 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_8C3A_007 | 1/1/1484:1487, 1/1/1833:1839, 1/1/1848:1850 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8C3A_052 | 1/1/1522:1527, 1/1/1587:1591, 1/1/1608:1609 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_8C3A_053 | 1/1/1533:1538, 1/1/1547:1556, 1/1/1574:1580 | No text annotation | homologous J3_8CRE_016 J3_65403.1 | |
| J3_8C3A_054 | 1/1/1627:1628, 1/1/1637:1641, 1/1/1806:1807 | No text annotation | homologous J3_5TBW_090 NA | |
| J3_8C3A_055 | 1/1/1650:1654, 1/1/1787:1788, 1/1/1792:1797 | No text annotation | homologous J3_5TBW_066 NA | |
| J3_8C3A_008 | 1/1/2410:2413, 1/1/2490:2495, 1/1/2562:2569 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_8C3A_009 | 1/1/2507:2510, 1/1/2525:2540, 1/1/2550:2553 | No text annotation | homologous J3_8CRE_020 J3_28639.1 | |
| J3_8C3A_056 | 1/1/2623:2625, 1/1/2726:2737, 1/1/2765:2770 | No text annotation | homologous J3_5TBW_067 NA | |
| J3_8C3A_010 | 1/1/2636:2638, 1/1/2662:2664, 1/1/2673:2678 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8C3A_011 | 1/1/2858:2861, 1/1/2886:2888, 1/1/2902:2908 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_8C3A_057 | 1/1/3138:3146, 1/1/3177:3185, 1/1/3230:3247 | No text annotation | ||
| J3_8C3A_058 | 1/1/3263:3264, 1/1/3280:3283, 1/1/3353:3355 | No text annotation | homologous J3_8CRE_025 J3_99595.1 | |
| J3_8C3A_059 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_8OI5_025 J3_12003.2 | |
| J3_8C3A_060 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8CRE_027 J3_35667.2 | |
| J3_8C3A_012 | 1/AS/112:122, 1/AS/148:157, 1/AS/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8C3A_061 | 1/AS/112:123, 1/AS/143:157, 1/AS/263:267 | No text annotation | ||
| J3_8C3A_062 | 1/AS/184:188, 1/AS/204:213, 1/AS/225:230 | No text annotation | homologous J3_8C3A_046 NA | |
| J3_8C3A_063 | 1/AS/340:356, 1/AS/363:368, 1/AU/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8C3A_064 | 1/AS/369:376, 1/AS/403:404, 1/AU/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8C3A_065 | 1/AS/369:379, 1/AS/390:404, 1/AU/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8C3A_013 | 1/AS/436:439, 1/AS/488:490, 1/AS/616:621 | No text annotation | homologous J3_8C3A_002 NA | |
| J3_8C3A_066 | 1/AS/497:498, 1/AS/586:595, 1/AS/604:609 | No text annotation | homologous J3_8C3A_050 NA | |
| J3_8C3A_014 | 1/AS/810:816, 1/AS/901:903, 1/AS/919:922 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8C3A_015 | 1/AS/825:827, 1/AS/859:863, 1/AS/888:891 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8C3A_067 | 1/AS/982:983, 1/AS/1058:1062, 1/AS/1088:1094 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_8C3A_016 | 1/AS/1226:1228, 1/AS/1252:1258, 1/AS/1273:1275 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_8C3A_017 | 1/AS/1475:1481, 1/AS/1853:1855, 1/AS/1867:1870 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8C3A_018 | 1/AS/1484:1487, 1/AS/1833:1839, 1/AS/1848:1850 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8C3A_068 | 1/AS/1522:1527, 1/AS/1587:1591, 1/AS/1608:1609 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8C3A_069 | 1/AS/1533:1538, 1/AS/1547:1556, 1/AS/1574:1580 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8C3A_070 | 1/AS/1627:1628, 1/AS/1637:1641, 1/AS/1806:1807 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8C3A_071 | 1/AS/1650:1654, 1/AS/1787:1788, 1/AS/1792:1797 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_8C3A_019 | 1/AS/2410:2413, 1/AS/2490:2495, 1/AS/2562:2569 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8C3A_020 | 1/AS/2507:2510, 1/AS/2525:2540, 1/AS/2550:2553 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8C3A_072 | 1/AS/2623:2625, 1/AS/2726:2737, 1/AS/2765:2770 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8C3A_021 | 1/AS/2636:2638, 1/AS/2662:2664, 1/AS/2673:2678 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8C3A_022 | 1/AS/2858:2861, 1/AS/2886:2888, 1/AS/2902:2908 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8C3A_073 | 1/AS/3138:3146, 1/AS/3177:3185, 1/AS/3230:3247 | No text annotation | ||
| J3_8C3A_074 | 1/AS/3263:3264, 1/AS/3280:3283, 1/AS/3353:3355 | No text annotation | homologous J3_8C3A_058 NA | |
| J3_8C3A_075 | 1/AT/9:14, 1/AT/66:67, 1/AT/111:112 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8C3A_076 | 1/AU/44:45, 1/AU/58:64, 1/AU/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8C3A_077 | 1/B/41:42, 1/B/431:437, 1/B/462:464 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8C3A_078 | 1/B/41:48, 1/B/429:437, 1/B/462:464 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_8C3A_079 | 1/B/210:226, 1/B/235:241, 1/B/248:251 | No text annotation | homologous J3_8C3A_084 NA | |
| J3_8C3A_023 | 1/B/631:633, 1/B/846:851, 1/B/947:951 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_8C3A_024 | 1/B/745:748, 1/B/758:760, 1/B/769:774 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_8C3A_025 | 1/B/866:870, 1/B/912:921, 1/B/928:932 | No text annotation | homologous J3_8C3A_036 NA | |
| J3_8C3A_026 | 1/B/1022:1024, 1/B/1064:1068, 1/B/1075:1079 | No text annotation | homologous J3_8C3A_037 NA | |
| J3_8C3A_027 | 1/B/1146:1149, 1/B/1568:1574, 1/B/1596:1603 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8C3A_028 | 1/B/1153:1156, 1/B/1454:1456, 1/B/1561:1564 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8C3A_029 | 1/B/1165:1172, 1/B/1183:1194, 1/B/1440:1444 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8C3A_030 | 1/B/1200:1205, 1/B/1248:1252, 1/B/1428:1434 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8C3A_031 | 1/B/1267:1273, 1/B/1312:1317, 1/B/1405:1411 | No text annotation | homologous J3_8C3A_042 NA | |
| J3_8C3A_080 | 1/B/1278:1279, 1/B/1288:1291, 1/B/1303:1307 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8C3A_032 | 1/B/1321:1323, 1/B/1372:1375, 1/B/1398:1401 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_8C3A_081 | 1/B/1321:1323, 1/B/1372:1377, 1/B/1393:1401 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8C3A_033 | 1/B/1456:1460, 1/B/1520:1527, 1/B/1558:1561 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8C3A_082 | 1/CM/41:42, 1/CM/431:437, 1/CM/462:464 | No text annotation | geometric J3_5J7L_001 J3_67856.4 | |
| J3_8C3A_083 | 1/CM/41:48, 1/CM/429:437, 1/CM/462:464 | No text annotation | homologous J3_4V88_079 NA | |
| J3_8C3A_084 | 1/CM/210:226, 1/CM/235:241, 1/CM/248:251 | No text annotation | homologous J3_8CRE_073 J3_93261.1 | |
| J3_8C3A_034 | 1/CM/631:633, 1/CM/846:851, 1/CM/947:951 | No text annotation | homologous J3_4V88_081 NA | |
| J3_8C3A_035 | 1/CM/745:748, 1/CM/758:760, 1/CM/769:774 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8C3A_036 | 1/CM/866:870, 1/CM/912:921, 1/CM/928:932 | No text annotation | homologous J3_8CRE_076 J3_83592.1 | |
| J3_8C3A_037 | 1/CM/1022:1024, 1/CM/1064:1068, 1/CM/1075:1079 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8C3A_038 | 1/CM/1146:1149, 1/CM/1568:1574, 1/CM/1596:1603 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8C3A_039 | 1/CM/1153:1156, 1/CM/1454:1456, 1/CM/1561:1564 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8C3A_040 | 1/CM/1165:1172, 1/CM/1183:1194, 1/CM/1440:1444 | No text annotation | homologous J3_4V88_037 NA | |
| J3_8C3A_041 | 1/CM/1200:1205, 1/CM/1248:1252, 1/CM/1428:1434 | No text annotation | homologous J3_4V88_038 NA | |
| J3_8C3A_042 | 1/CM/1267:1273, 1/CM/1312:1317, 1/CM/1405:1411 | No text annotation | homologous J3_8CRE_082 J3_04315.1 | |
| J3_8C3A_085 | 1/CM/1278:1279, 1/CM/1288:1291, 1/CM/1303:1307 | No text annotation | homologous J3_4V88_082 NA | |
| J3_8C3A_043 | 1/CM/1321:1323, 1/CM/1372:1375, 1/CM/1398:1401 | No text annotation | geometric J3_4V88_040 NA | |
| J3_8C3A_086 | 1/CM/1321:1323, 1/CM/1372:1377, 1/CM/1393:1401 | No text annotation | homologous J3_4V88_083 NA | |
| J3_8C3A_044 | 1/CM/1456:1460, 1/CM/1520:1527, 1/CM/1558:1561 | No text annotation | homologous J3_4V88_041 NA | |
| J4_8C3A_001 | 1/1/111:112, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_5TBW_001 NA | |
| J4_8C3A_002 | 1/1/184:188, 1/1/204:207, 1/1/211:213, 1/1/225:230 | No text annotation | homologous J4_5TBW_002 NA | |
| J4_8C3A_003 | 1/1/1447:1453, 1/1/1471:1472, 1/1/1873:1876, 1/1/2330:2331 | No text annotation | homologous J4_5TBW_003 NA | |
| J4_8C3A_004 | 1/1/1488:1492, 1/1/1516:1521, 1/1/1610:1611, 1/1/1825:1832 | No text annotation | homologous J4_5TBW_004 NA | |
| J4_8C3A_005 | 1/1/1670:1671, 1/1/1689:1690, 1/1/1748:1749, 1/1/1768:1769 | No text annotation | homologous J4_5TBW_005 NA | |
| J4_8C3A_006 | 1/1/2108:2112, 1/1/2124:2128, 1/1/2164:2168, 1/1/2295:2300 | No text annotation | homologous J4_5TBW_006 NA | |
| J4_8C3A_007 | 1/1/2170:2172, 1/1/2226:2227, 1/1/2245:2254, 1/1/2288:2293 | No text annotation | homologous J4_5TBW_007 NA | |
| J4_8C3A_008 | 1/1/2626:2630, 1/1/2684:2688, 1/1/2712:2714, 1/1/2723:2725 | No text annotation | homologous J4_5TBW_008 NA | |
| J4_8C3A_009 | 1/1/2982:2984, 1/1/3014:3015, 1/1/3070:3072, 1/1/3106:3108 | No text annotation | homologous J4_5TBW_009 NA | |
| J4_8C3A_010 | 1/AS/111:112, 1/AS/267:272, 1/AS/293:299, 1/AS/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_8C3A_011 | 1/AS/184:188, 1/AS/204:207, 1/AS/211:213, 1/AS/225:230 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8C3A_012 | 1/AS/1447:1453, 1/AS/1471:1472, 1/AS/1873:1876, 1/AS/2330:2331 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8C3A_013 | 1/AS/1488:1492, 1/AS/1516:1521, 1/AS/1610:1611, 1/AS/1825:1832 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8C3A_014 | 1/AS/1670:1671, 1/AS/1689:1690, 1/AS/1748:1749, 1/AS/1768:1769 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_8C3A_015 | 1/AS/2108:2112, 1/AS/2124:2128, 1/AS/2164:2168, 1/AS/2295:2300 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8C3A_016 | 1/AS/2170:2172, 1/AS/2226:2227, 1/AS/2245:2254, 1/AS/2288:2293 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8C3A_017 | 1/AS/2626:2630, 1/AS/2684:2688, 1/AS/2712:2714, 1/AS/2723:2725 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8C3A_018 | 1/AS/2982:2984, 1/AS/3014:3015, 1/AS/3070:3072, 1/AS/3106:3108 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_8C3A_019 | 1/B/99:107, 1/B/305:307, 1/B/355:359, 1/B/381:382 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8C3A_020 | 1/B/620:622, 1/B/960:965, 1/B/1006:1017, 1/B/1088:1089 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8C3A_021 | 1/CM/99:107, 1/CM/305:307, 1/CM/355:359, 1/CM/381:382 | No text annotation | homologous J4_4V88_023 NA | |
| J4_8C3A_022 | 1/CM/620:622, 1/CM/960:965, 1/CM/1006:1017, 1/CM/1088:1089 | No text annotation | homologous J4_4V88_024 NA | |
| J5_8C3A_001 | 1/1/19:21, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_5TBW_001 NA | |
| J5_8C3A_002 | 1/1/656:661, 1/1/795:798, 1/1/937:940, 1/1/1371:1372, 1/1/1427:1433 | No text annotation | homologous J5_5TBW_002 NA | |
| J5_8C3A_003 | 1/1/673:676, 1/1/700:704, 1/1/711:719, 1/1/745:747, 1/1/778:783 | No text annotation | homologous J5_5TBW_003 NA | |
| J5_8C3A_004 | 1/1/1902:1910, 1/1/1934:1935, 1/1/2087:2088, 1/1/2092:2100, 1/1/2309:2311 | No text annotation | homologous J5_5TBW_004 NA | |
| J5_8C3A_005 | 1/1/2377:2384, 1/1/2787:2795, 1/1/2839:2848, 1/1/2923:2929, 1/1/2947:2952 | No text annotation | ||
| J5_8C3A_006 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2623, 1/1/2770:2776 | No text annotation | homologous J5_5TBW_006 NA | |
| J5_8C3A_007 | 1/AS/19:21, 1/AU/35:42, 1/AU/102:107, 1/AU/115:116, 1/AU/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8C3A_008 | 1/AS/656:661, 1/AS/795:798, 1/AS/937:940, 1/AS/1371:1372, 1/AS/1427:1433 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8C3A_009 | 1/AS/673:676, 1/AS/700:704, 1/AS/711:719, 1/AS/745:747, 1/AS/778:783 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_8C3A_010 | 1/AS/1902:1910, 1/AS/1934:1935, 1/AS/2087:2088, 1/AS/2092:2100, 1/AS/2309:2311 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8C3A_011 | 1/AS/2377:2384, 1/AS/2787:2795, 1/AS/2839:2848, 1/AS/2923:2929, 1/AS/2947:2952 | No text annotation | ||
| J5_8C3A_012 | 1/AS/2394:2397, 1/AS/2583:2586, 1/AS/2599:2600, 1/AS/2622:2623, 1/AS/2770:2776 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8C3A_013 | 1/B/31:35, 1/B/471:477, 1/B/507:514, 1/B/534:544, 1/B/590:593 | No text annotation | ||
| J5_8C3A_014 | 1/B/54:57, 1/B/90:97, 1/B/384:386, 1/B/407:409, 1/B/420:424 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8C3A_015 | 1/B/124:140, 1/B/171:180, 1/B/201:202, 1/B/261:263, 1/B/287:291 | No text annotation | ||
| J5_8C3A_016 | 1/B/124:140, 1/B/171:180, 1/B/201:202, 1/B/261:266, 1/B/285:291 | No text annotation | ||
| J5_8C3A_017 | 1/B/634:639, 1/B/691:697, 1/B/724:729, 1/B/791:801, 1/B/839:845 | No text annotation | ||
| J5_8C3A_018 | 1/CM/31:35, 1/CM/471:477, 1/CM/507:512, 1/CM/541:544, 1/CM/590:593 | No text annotation | homologous J5_8CRE_018 J5_80702.1 | |
| J5_8C3A_019 | 1/CM/31:35, 1/CM/471:477, 1/CM/507:514, 1/CM/534:544, 1/CM/590:593 | No text annotation | ||
| J5_8C3A_020 | 1/CM/54:57, 1/CM/90:97, 1/CM/384:386, 1/CM/407:409, 1/CM/420:424 | No text annotation | homologous J5_4V88_019 NA | |
| J5_8C3A_024 | 1/CM/124:140, 1/CM/171:180, 1/CM/201:202, 1/CM/261:263, 1/CM/287:291 | No text annotation | ||
| J5_8C3A_025 | 1/CM/124:140, 1/CM/171:180, 1/CM/201:202, 1/CM/261:266, 1/CM/285:291 | No text annotation | ||
| J5_8C3A_023 | 1/CM/634:639, 1/CM/691:697, 1/CM/724:729, 1/CM/791:801, 1/CM/839:845 | No text annotation | ||
| J6_8C3A_001 | 1/1/21:27, 1/1/55:67, 1/1/74:78, 1/1/105:109, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_8C3A_002 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2625, 1/1/2726:2737, 1/1/2765:2776 | No text annotation | ||
| J6_8C3A_003 | 1/AS/21:26, 1/AS/57:67, 1/AS/74:78, 1/AS/105:109, 1/AS/321:331, 1/AU/32:35 | No text annotation | ||
| J6_8C3A_004 | 1/AS/2394:2397, 1/AS/2583:2586, 1/AS/2599:2600, 1/AS/2622:2625, 1/AS/2726:2737, 1/AS/2765:2776 | No text annotation | ||
| J7_8C3A_001 | 1/1/945:950, 1/1/963:964, 1/1/1110:1113, 1/1/1137:1142, 1/1/1153:1157, 1/1/1334:1335, 1/1/1361:1366 | No text annotation | ||
| J7_8C3A_002 | 1/AS/945:950, 1/AS/963:964, 1/AS/1110:1113, 1/AS/1137:1142, 1/AS/1153:1157, 1/AS/1334:1335, 1/AS/1361:1366 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_8C3A_021 | No text annotation | ||
| J5_8C3A_022 | No text annotation |
Coloring options: