HL_8C3A_082

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8C3A|1|AS|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_082 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0618

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8C3A|1|AS|U|193
8C3A|1|AS|U|194
8C3A|1|AS|G|195
8C3A|1|AS|G|196
8C3A|1|AS|A|197
8C3A|1|AS|A|198
8C3A|1|AS|C|199
8C3A|1|AS|A|200

Current chains

Chain AS

25S

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24

Chain BZ

60S ribosomal protein L32