HL_8C3A_132

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8C3A|1|AS|G|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_132 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0491

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8C3A|1|AS|C|2588
8C3A|1|AS|U|2589
8C3A|1|AS|G|2590
8C3A|1|AS|G|2591
8C3A|1|AS|G|2592
8C3A|1|AS|G|2593
8C3A|1|AS|C|2594
8C3A|1|AS|G|2595
8C3A|1|AS|G|2596

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain BW

60S ribosomal protein L29