HL_8C3A_137

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_137 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0574

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8C3A|1|AS|U|2716
8C3A|1|AS|G|2717
8C3A|1|AS|A|2718
8C3A|1|AS|A|2719
8C3A|1|AS|A|2720
8C3A|1|AS|G|2721

Current chains

Chain AS

25S

Nearby chains

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BO

60S ribosomal protein L21-A

Chain CJ

60S ribosomal protein L42-B