HL_8C3A_141

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_141 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1079

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8C3A|1|AS|U|2892
8C3A|1|AS|U|2893
8C3A|1|AS|G|2894
8C3A|1|AS|U|2895
8C3A|1|AS|U|2896
8C3A|1|AS|C|2897
8C3A|1|AS|A|2898

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3