HL_8C3A_149

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8C3A|1|AS|U|3316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_149 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.169

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8C3A|1|AS|C|3315
8C3A|1|AS|U|3316
8C3A|1|AS|U|3317
8C3A|1|AS|G|3318

Current chains

Chain AS

25S

Nearby chains

Chain CV

40S ribosomal protein S8