HL_8C3A_168
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8C3A_168 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1247
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8C3A|1|B|A|518
8C3A|1|B|A|519
8C3A|1|B|U|520
8C3A|1|B|G|521
8C3A|1|B|U|522
8C3A|1|B|A|523
8C3A|1|B|A|524
8C3A|1|B|A|525
8C3A|1|B|U|526
8C3A|1|B|A|527
8C3A|1|B|C|528
8C3A|1|B|C|529
8C3A|1|B|U|530
Current chains
- Chain B
- 18S
Nearby chains
- Chain L
- Ribosomal protein S4
- Chain a
- 40S ribosomal protein S24
Coloring options: