HL_8C3A_176

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_176 not in the Motif Atlas

Homologous match to HL_8C3A_212

Geometric discrepancy: 0.0405

The information below is about HL_8C3A_212

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8C3A|1|B|C|922
8C3A|1|B|G|923
8C3A|1|B|A|924
8C3A|1|B|A|925
8C3A|1|B|A|926
8C3A|1|B|G|927

Current chains

Chain B

18S

Nearby chains

Chain P

40S ribosomal protein S13

Chain c

40S ribosomal protein S26