HL_8C3A_187

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_187 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.0579

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8C3A|1|B|C|1488
8C3A|1|B|G|1489
8C3A|1|B|A|1490
8C3A|1|B|G|1491
8C3A|1|B|A|1492
8C3A|1|B|G|1493

Current chains

Chain B

18S

Nearby chains

Chain U

40S ribosomal protein S18-B

Chain V

40S ribosomal protein S19-A