HL_8C3A_225

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8C3A|1|CM|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

17

Unit IDs

8C3A|1|CM|G|1581
8C3A|1|CM|U|1582
8C3A|1|CM|C|1583
8C3A|1|CM|A|1584
8C3A|1|CM|U|1585
8C3A|1|CM|C|1586
8C3A|1|CM|A|1587
8C3A|1|CM|G|1588
8C3A|1|CM|C|1589

Current chains

Chain CM

18S

Nearby chains

Chain CQ

Ribosomal protein S3

Chain DD

40S ribosomal protein S16

Chain DG

40S ribosomal protein S19-A

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A