HL_8C6J_002

3D structure

PDB id

8C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human spliceosomal PM5 C* complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

8C6J|1|2|C|164, 8C6J|1|2|U|167, 8C6J|1|2|A|168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C6J|1|2|G|158
8C6J|1|2|U|159
8C6J|1|2|A|160
8C6J|1|2|U|161
8C6J|1|2|U|162
8C6J|1|2|G|163
8C6J|1|2|C|164
8C6J|1|2|A|165
8C6J|1|2|G|166
8C6J|1|2|U|167
8C6J|1|2|A|168
8C6J|1|2|C|169
8C6J|1|2|C|170
8C6J|1|2|U|171
8C6J|1|2|C|172

Current chains

Chain 2

U2 snRNA

Nearby chains

Chain D

PRKR-interacting protein 1

Chain Y

U2 small nuclear ribonucleoprotein B''

Chain n

Small nuclear ribonucleoprotein Sm D3