HL_8C6J_005

3D structure

PDB id

8C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human spliceosomal PM5 C* complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8C6J|1|6|C|11, 8C6J|1|6|G|12

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C6J_005 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2885

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8C6J|1|6|C|8
8C6J|1|6|U|9
8C6J|1|6|U|10
8C6J|1|6|C|11
8C6J|1|6|G|12
8C6J|1|6|G|13

Current chains

Chain 6

U6 snRNA

Nearby chains