HL_8C6J_007
3D structure
- PDB id
- 8C6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human spliceosomal PM5 C* complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAUGUAUCAACUUACAAGACUGAUUCUUAUGUAUUUACUGACCUGUGUUUUUUUGCUAC
- Length
- 60 nucleotides
- Bulged bases
- 8C6J|1|I|A|11, 8C6J|1|I|C|22, 8C6J|1|I|U|132, 8C6J|1|I|G|133, 8C6J|1|I|A|134, 8C6J|1|I|C|137, 8C6J|1|I|G|158, 8C6J|1|I|U|159, 8C6J|1|I|U|160, 8C6J|1|I|U|161, 8C6J|1|I|U|162, 8C6J|1|I|U|163
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C6J|1|I|G|1
8C6J|1|I|U|2
8C6J|1|I|A|3
8C6J|1|I|U|4
8C6J|1|I|G|5
8C6J|1|I|U|6
8C6J|1|I|A|7
8C6J|1|I|U|8
8C6J|1|I|C|9
8C6J|1|I|A|10
8C6J|1|I|A|11
8C6J|1|I|C|13
8C6J|1|I|U|14
8C6J|1|I|U|15
8C6J|1|I|A|16
8C6J|1|I|C|17
8C6J|1|I|A|18
8C6J|1|I|A|19
8C6J|1|I|G|20
8C6J|1|I|A|21
8C6J|1|I|C|22
8C6J|1|I|U|132
8C6J|1|I|G|133
8C6J|1|I|A|134
8C6J|1|I|U|135
8C6J|1|I|U|136
8C6J|1|I|C|137
8C6J|1|I|U|138
8C6J|1|I|U|139
8C6J|1|I|A|140
8C6J|1|I|U|141
8C6J|1|I|G|142
8C6J|1|I|U|143
8C6J|1|I|A|144
8C6J|1|I|U|145
8C6J|1|I|U|146
8C6J|1|I|U|147
8C6J|1|I|A|148
8C6J|1|I|C|149
8C6J|1|I|U|150
8C6J|1|I|G|151
8C6J|1|I|A|152
8C6J|1|I|C|153
8C6J|1|I|C|154
8C6J|1|I|U|155
8C6J|1|I|G|156
8C6J|1|I|U|157
8C6J|1|I|G|158
8C6J|1|I|U|159
8C6J|1|I|U|160
8C6J|1|I|U|161
8C6J|1|I|U|162
8C6J|1|I|U|163
8C6J|1|I|U|164
8C6J|1|I|U|165
8C6J|1|I|G|166
8C6J|1|I|C|167
8C6J|1|I|U|168
8C6J|1|I|A|169
8C6J|1|I|C|170
Current chains
- Chain I
- PM5 Intron
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain 6
- U6 spliceosomal RNA; U6 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- PRKR-interacting protein 1
- Chain E
- PM5 5' Exon
- Chain F
- Splicing factor Cactin
- Chain G
- Protein FAM32A
- Chain K
- SNW domain-containing protein 1
- Chain L
- Protein BUD31 homolog
- Chain M
- Pre-mRNA-splicing factor RBM22
- Chain O
- Cell division cycle 5-like protein
- Chain S
- Crooked neck-like protein 1
- Chain V
- ATP-dependent RNA helicase DHX8
- Chain Z
- NF-kappa-B-activating protein
- Chain o
- Pre-mRNA-processing factor 17
- Chain z
- Splicing regulator SDE2
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