HL_8C83_004

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

8C83|1|2|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C83_004 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2772

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8C83|1|2|C|190
8C83|1|2|C|191
8C83|1|2|U|192
8C83|1|2|U|193
8C83|1|2|U|194
8C83|1|2|G|195

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-B