HL_8C83_025

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUUUGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C83_025 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.335

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

8C83|1|2|A|1147
8C83|1|2|C|1625
8C83|1|2|U|1626
8C83|1|2|U|1627
8C83|1|2|U|1628
8C83|1|2|G|1629
8C83|1|2|U|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S2